Plant FIBer expression Database

Potri.012G005800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24490 369 / 1e-128 30S ribosomal protein, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G002200
[exp]
501 / 0 AT5G24490 362 / 3e-126 30S ribosomal protein, putative (.1)
Potri.012G026375
[exp]
247 / 7e-82 AT5G24490 204 / 4e-65 30S ribosomal protein, putative (.1)
Potri.012G009001
[exp]
182 / 1e-57 AT5G24490 147 / 3e-44 30S ribosomal protein, putative (.1)
Potri.011G055100
[exp]
178 / 3e-56 AT5G24490 142 / 2e-42 30S ribosomal protein, putative (.1)
Potri.011G054700
[exp]
124 / 6e-36 AT5G24490 89 / 1e-22 30S ribosomal protein, putative (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015569
[exp]
359 / 8e-125 AT5G24490 358 / 2e-124 30S ribosomal protein, putative (.1)
Lus10032935
[exp]
358 / 2e-124 AT5G24490 361 / 1e-125 30S ribosomal protein, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
PF16321 Ribosom_S30AE_C Sigma 54 modulation/S30EA ribosomal protein C terminus
Representative CDS sequence
>Potri.012G005800.5 pacid=42783464 polypeptide=Potri.012G005800.5.p locus=Potri.012G005800 ID=Potri.012G005800.5.v4.1 annot-version=v4.1
ATGGCTTCTCTTGTAGAAGGTACTTTGCAGACAAGCTTTAACAACCCATTTGTCTCATTATCACCAACACCACCTAAGACTTCACTAGCTTCTTCTTCAG
TCATTTCTACCAAGACCCAGATCCCAAAATCATCTCTCAAGTCCAGTTTTTTAGGCAAAAATATGAGCTTTATTGAGTTGGGAAGGACAGCAAGGACTCC
TTTAACCCATGGTGGTTGCTCAGTTAAGATGTCATGGGATGGTCCACTTCACTCTGTCAAATTAATCATTCAAGGCAAAAACTTGGAGTTAACTGATACA
GTTAAGAGACATGTGGAAGACAAAGTAGGAAAGGCAGTTCAAAAACATAGTCATCTTGTTAGGGAAGTTGATGTAAGATTGTCTGTTAGAGGTGGAGAGT
TGGGGAAAGGTCCGAGAATTAGAAGATGCGAGGTGACTTTGTTTACAAATAGGCATGGAGTGGTGAGAGCAGAGGAAGATGCTGAGACAATCTATGCAAG
TATTGATCTGGTGTCGTCAATTATCCAAAGAAAGTTGAGGAAGATTAAGGAGAAGGAGTCTGATCATGGTAGACACATGAAAGGGTTTAATAGGCTGAAG
GTTAGAGAACCAGTGCCACAAGTGGTGGAGGGTGATGCGGATGAAGTTTCACAGCAAGAAGTTGAGGACTCCATCGAAGAGGTTGTTCGCACAAAGTTTT
TTGACATGCCACCTTTGACTGTCTCGGAAGCTATTGAGCAGCTGGAAAATGTCGATCATGATTTCTATGGTTTCAGGAATGAAGAAACTGGTGAGATAAA
TATTGTTTACAAAAGAAAAGCTGGTGGATATGGTCTCATCATACCTAAAGGAAATGACGAAGCTGAGAGATTAGAGCCTTTGGTGGTAGAACCAGCTAGA
GAATCATCATTGGCAGAGTAA
AA sequence
>Potri.012G005800.5 pacid=42783464 polypeptide=Potri.012G005800.5.p locus=Potri.012G005800 ID=Potri.012G005800.5.v4.1 annot-version=v4.1
MASLVEGTLQTSFNNPFVSLSPTPPKTSLASSSVISTKTQIPKSSLKSSFLGKNMSFIELGRTARTPLTHGGCSVKMSWDGPLHSVKLIIQGKNLELTDT
VKRHVEDKVGKAVQKHSHLVREVDVRLSVRGGELGKGPRIRRCEVTLFTNRHGVVRAEEDAETIYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK
VREPVPQVVEGDADEVSQQEVEDSIEEVVRTKFFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGNDEAERLEPLVVEPAR
ESSLAE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G24490 30S ribosomal protein, putativ... Potri.012G005800
[exp]
0 1
AT4G26090 RPS2 RESISTANT TO P. SYRINGAE 2, NB... Potri.006G147100
[exp]
1.00 0.9483
AT4G01030 pentatricopeptide (PPR) repeat... Potri.014G097000
[exp]
1.41 0.9453
AT2G15690 Tetratricopeptide repeat (TPR)... Potri.014G038900
[exp]
3.00 0.9363
AT3G12930 Lojap-related protein (.1) Potri.001G458600
[exp]
4.47 0.9294
AT5G08520 MYB Duplicated homeodomain-like su... Potri.007G076200
[exp]
5.19 0.9032
AT1G21640 ATNADK2, NADK2,... NAD kinase 2 (.1.2) Potri.005G182600
[exp]
6.92 0.8928 Pt-NADK2.1
AT1G51310 transferases;tRNA (5-methylami... Potri.001G259000
[exp]
8.24 0.8747
AT2G41560 ACA4 "autoinhibited Ca\(2+\)-ATPase... Potri.016G043100
[exp]
8.42 0.8593
AT2G29150 NAD(P)-binding Rossmann-fold s... Potri.005G039300
[exp]
13.85 0.9036
Potri.019G108050
[exp]
13.89 0.8265

Potri.012G005800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.