Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24470 305 / 9e-94 APRR5 pseudo-response regulator 5 (.1) AT2G46790 236 / 4e-70 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G60100 189 / 1e-52 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G02810 170 / 2e-44 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G61380 129 / 4e-31 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT2G25180 103 / 8e-23 GARP ARR12 response regulator 12 (.1) AT3G16857 102 / 2e-22 GARP ARR1 response regulator 1 (.1.2) AT4G16110 101 / 4e-22 GARP ARR2 response regulator 2 (.1) AT4G31920 98 / 4e-21 GARP ARR10 response regulator 10 (.1) AT1G67710 97 / 6e-21 GARP ARR11 response regulator 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002300 [exp] 986 / 0 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 457 / 4e-152 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.002G179800 [exp] 452 / 4e-150 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.008G046200 [exp] 188 / 2e-50 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.010G215200 [exp] 188 / 2e-50 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.015G061900 [exp] 132 / 3e-32 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.006G188000 [exp] 103 / 1e-22 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.018G111300 [exp] 102 / 3e-22 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.008G181000 [exp] 101 / 4e-22 AT1G67710 383 / 5e-127 response regulator 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008878 [exp] 560 / 0 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10023230 [exp] 545 / 0 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10015571 [exp] 489 / 2e-165 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10032934 [exp] 482 / 1e-162 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10008879 [exp] 308 / 1e-94 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10023229 [exp] 296 / 3e-92 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10014018 [exp] 172 / 1e-44 AT5G02810 452 / 6e-148 pseudo-response regulator 7 (.1) Lus10000566 [exp] 139 / 1e-34 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 139 / 4e-34 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 133 / 1e-32 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.012G005900.11 pacid=42783920 polypeptide=Potri.012G005900.11.p locus=Potri.012G005900 ID=Potri.012G005900.11.v4.1 annot-version=v4.1 ATGGGGGAGGTAGTGATTAGTAGTGGTGAAGAATTGGAGGTGAGATCAAAGAGTGAAAGAGAGGAGGAAAAACAGAGGAAACAGAGTAAAGAAGAAACAG GGGAGGTGAAAAAAAAGAAGAAAAAGAAGAAAGAAGGTGAAGGTTTGAATGACGGGTTAGTGAGATGGGACGGGTTTCTACCAAGAATGGTGTTAAGGGT GTTGTTAGTTGAAGCTGATGATTCAACTAGACAGATAATTGCTGCTCTTCTTAGGAAATGTAGTTATAGAGTTGTTAGTGTTCCTGATGGCTTAAAGGCA TGGGAGATACTGAAAGGAAGGCCACATGGCATAGACCTCATATTGACTGAAGTGGATTTGCCTTCGATATCTGGATATCCTCTTCTTACTATTATAATGG AGCATGAGATTTGCAAAAACATTCCAGTCATAATGATGTCCTCTCAGGATTCAATTAGTACAGTTTATAAATGCATGTTGAGAGGTGCTGCTGACTATCT TGTCAAGCCTTTAAGGAAAAATGAACTGAGAAACTTGTGGCAACATGTATGGAGAAGACAATCTTCCCTTGCTGGAGGAAATGGCCCCCAAGATGAAAGC GTTGGACAGGACAAGATTGAAGCCACTTCAGAAAATAGTCCTGCCAGCAATCATGCAAGTGGAGAAATGGCTTCTATTCAGAGGAGTAAAGGGCAAACAG AGAAAGGGAGTGATGCTCAGAGCTCTTGTACAAAGCCAGACTTGGAAGCTGAGAGCAGCCACATGGAAAATATGCAGGAATTTTTGCAGCCTGTACGGAG CATATTTTCGTTGACTGACATGAATATGCAGAAGCGTGAAATGCATGTGAATCTGGGTCAGAAATTGCTTTTGCATGATAGAGAAGCTGAAGGTTCAGCT GCAGCTGCCCGTGAGGATGCTAATATAATGGATGTGGACAAGGAAATTTCTCCAGGAAATGGAAGAACGGGTGCTTATGTTGCCATTGAGAGTTGTGACA ACGATGTTGCCCTTGCCAACTCTCACAGAGAAGCCTTTGATTTCATGGGAGCATCTACTAATCGCAGTTCTTCTTTCAATAACGTCAAAATCAACTTTGA TTCTTCTCCACATTTGGATCTTTCCTTGAGAAGATCTCATCCAAGTGGGTTTGAGATTCGAGATACGGAAGAAAGACGGGCTCTCTGGCATTCTAATGCC TCAGCCTTTACACAGTACATTAACAGGCCTCTACAGCTTCCACATTCAGCACTGGAAAGTACTGGGAATCAGAAGGAATTAGGAACCAATTATGACAGAA AAATATCCAGTACTGGCTATAACTCTGATGCCCTGAGTCTAGCACCAAGCACTCAAAAAAGTGAGATCTCTCTGGCAGCTGGTCAAACCAAGGAATCTGA AATTGCAACTTCATCTCCTGGACAAAGAGTGTTTCCTATCCAAATTCCAGCGAAAGAAACAAGACTCAATAATCTATGCAACAGTTATGGCTCCGTGTTT CCCCCAATATTTTGCAAACAATCAGGTTTATCACCAATGATGAGTCCAAGTTCAGCTTGCCAGCAAGAGCCCACCTATAAGGTGAACCAATTTCAACATT CCAATCATGGGAGCACCTCCGAACAGAATCGACTTGGTCAACATACAAATGATTCCACCAATGGTTCACTACAAAAGCAAGAAGACAGATTGGATTCCTT GGAAGATAGAGGACTTATTTCTCCTGCCACTGATCAGAGTGCAAGTAGTAGTTTCTGTAATGGTGCTGCAAGTCACTTTAACAGCATGGGCTATGGAAGC ACTTCTGGAAGCAATGGCAATGTTGATCAAGTTGCTATTGTCAGGGATGCTTCTGAGAGCAAGAATGAGGAAGGTGCTTTCACACATTCATACTCTCACA GATCTATTCAAAGAGAAGCAGCTCTAACTAAGTTTCGCTTGAAGCGAAAAGAGAGATGCTATGAGAAGAAGGTTCGGTATGAGAGCAGAAAAAAACTTGC TGAGCAGCGTCCTAGAGTGAAAGGACAATTTGTTCGCCAAGTGCACATTGATCCCTCACCTGCGGAAACTGATCAGTAG
AA sequence Show only first row Show all	>Potri.012G005900.11 pacid=42783920 polypeptide=Potri.012G005900.11.p locus=Potri.012G005900 ID=Potri.012G005900.11.v4.1 annot-version=v4.1 MGEVVISSGEELEVRSKSEREEEKQRKQSKEETGEVKKKKKKKKEGEGLNDGLVRWDGFLPRMVLRVLLVEADDSTRQIIAALLRKCSYRVVSVPDGLKA WEILKGRPHGIDLILTEVDLPSISGYPLLTIIMEHEICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSLAGGNGPQDES VGQDKIEATSENSPASNHASGEMASIQRSKGQTEKGSDAQSSCTKPDLEAESSHMENMQEFLQPVRSIFSLTDMNMQKREMHVNLGQKLLLHDREAEGSA AAAREDANIMDVDKEISPGNGRTGAYVAIESCDNDVALANSHREAFDFMGASTNRSSSFNNVKINFDSSPHLDLSLRRSHPSGFEIRDTEERRALWHSNA SAFTQYINRPLQLPHSALESTGNQKELGTNYDRKISSTGYNSDALSLAPSTQKSEISLAAGQTKESEIATSSPGQRVFPIQIPAKETRLNNLCNSYGSVF PPIFCKQSGLSPMMSPSSACQQEPTYKVNQFQHSNHGSTSEQNRLGQHTNDSTNGSLQKQEDRLDSLEDRGLISPATDQSASSSFCNGAASHFNSMGYGS TSGSNGNVDQVAIVRDASESKNEEGAFTHSYSHRSIQREAALTKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHIDPSPAETDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.012G005900 [exp]	0	1
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.015G002300 [exp]	1.00	0.9428	APRR5.3,PtpRR3
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.017G146800 [exp]	2.44	0.9361
					Potri.001G093100 [exp]	3.46	0.9416
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.001G249100 [exp]	10.39	0.9180
AT1G70880			Polyketide cyclase/dehydrase a...		Potri.004G020100 [exp]	15.29	0.8789
					Potri.007G085800 [exp]	17.05	0.8494
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Potri.005G229700 [exp]	19.51	0.8435
					Potri.011G072616 [exp]	21.00	0.8664
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.002G009000 [exp]	22.36	0.8843	HMGB901,Pt-HMGB3.2
AT5G38260			Protein kinase superfamily pro...		Potri.015G044875 [exp]	28.12	0.8979

Compare expression of checked genes

Potri.012G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.