Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	OMT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 605 / 0 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 350 / 3e-119 O-methyltransferase family protein (.1) AT1G51990 340 / 1e-115 O-methyltransferase family protein (.1.2) AT1G33030 335 / 1e-113 O-methyltransferase family protein (.1) AT1G77530 323 / 1e-108 O-methyltransferase family protein (.1) AT1G63140 314 / 4e-105 O-methyltransferase family protein (.1.2) AT1G21130 301 / 3e-100 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21100 300 / 1e-99 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21120 297 / 9e-99 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT1G21110 297 / 1e-98 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003100 [exp] 689 / 0 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 430 / 6e-151 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 419 / 8e-147 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 418 / 1e-146 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 418 / 2e-146 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 418 / 2e-146 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 417 / 9e-146 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 400 / 7e-140 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 391 / 1e-135 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032929 [exp] 640 / 0 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 635 / 0 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10005133 [exp] 385 / 2e-133 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002667 [exp] 385 / 3e-133 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10002669 [exp] 380 / 2e-131 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10006146 [exp] 349 / 2e-119 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10009442 [exp] 317 / 1e-106 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10014825 [exp] 253 / 5e-82 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10014400 [exp] 250 / 3e-80 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1) Lus10023892 [exp] 246 / 1e-78 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.012G006400.1 pacid=42782597 polypeptide=Potri.012G006400.1.p locus=Potri.012G006400 ID=Potri.012G006400.1.v4.1 annot-version=v4.1 ATGGGTTCGACAGGTGAAACTCAGATGACTCCAACTCAGGTATCAGATGAAGAGGCACACCTCTTTGCCATGCAACTAGCCAGTGCTTCAGTTCTACCAA TGATCCTCAAAACAGCCATTGAACTCGACCTTCTTGAAATCATGGCTAAAGCTGGCCCTGGTGCTTTCTTGTCCACATCTGAGATAGCTTCTCACCTCCC TACCAAAAACCCTGATGCGCCTGTCATGTTAGACCGTATCTTGCGCCTCCTGGCTAGCTACTCCATTCTTACTTGCTCTCTGAAAGATCTTCCTGATGGG AAAGTTGAGAGACTGTATGGCCTTGCTCCTGTTTGCAAATTCTTGACCAAGAACGAGGATGGTGTCTCTGTCAGCCCTCTCTGTCTCATGAACCAGGACA AGGTCCTCATGGAAAGCTGGTATTATTTGAAAGATGCAATTCTTGATGGAGGAATTCCATTTAACAAGGCCTATGGGATGACTGCATTTGAATATCATGG CACGGATCCAAGATTCAACAAGGTGTTCAATAAGGGAATGTCTGACCACTCTACCATTACCATGAAGAAGCTTCTTGAGACCTACAAAGGCTTTGAAGGC CTCACATCCTTGGTGGATGTTGGTGGTGGGACTGGAGCTGTCGTTAACACCATCGTCTCTAAATACCCTTCAATTAAGGGCATTAACTTTGATCTGCCCC ACGTCATTGAGGATGCCCCATCTTATCCCGGTGTGGAGCATGTTGGTGGGGACATGTTTGTTAGTGTGCCCAAAGCAGATGCCGTTTTCATGAAGTGGAT ATGCCATGATTGGAGCGACGCACACTGCTTAAAATTCTTGAAGAATTGCTATGACGCCTTGCCGGAAAACGGCAAGGTGATACTTGTTGAGTGCATTCTT CCCGTGGCTCCTGACACAAGCCTTGCCACCAAGGGAGTCGTGCACATTGATGTTATCATGCTGGCGCACAACCCCGGTGGGAAAGAGAGGACCGAAAAGG AATTTGAGGGCTTAGCAAAGGGAGCTGGCTTTCAAGGTTTTGAAGTAATGTGCTGTGCATTCAACACACATGTCATTGAATTCCGCAAGAACTAA
AA sequence Show only first row Show all	>Potri.012G006400.1 pacid=42782597 polypeptide=Potri.012G006400.1.p locus=Potri.012G006400 ID=Potri.012G006400.1.v4.1 annot-version=v4.1 MGSTGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDG KVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKLLETYKGFEG LTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECIL PVAPDTSLATKGVVHIDVIMLAHNPGGKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEFRKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	0	1	OMT1.1
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	1.00	0.9582	Pt-SAM1.1
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	1.73	0.9533
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	2.00	0.9479
AT4G27880			Protein with RING/U-box and TR...		Potri.012G015500 [exp]	2.64	0.9423	SINAT4.2
AT1G76070			unknown protein		Potri.002G016500 [exp]	3.00	0.9405
AT3G27960			Tetratricopeptide repeat (TPR)...		Potri.008G094700 [exp]	3.16	0.9541
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	3.46	0.9454	Pt-4CL.3,Ptr4CL3
AT3G03550			RING/U-box superfamily protein...		Potri.013G073500 [exp]	3.74	0.9330
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Potri.001G072300 [exp]	4.00	0.9327
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.009G099800 [exp]	4.47	0.9455	CAM1

Compare expression of checked genes

Potri.012G006400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.