Plant FIBer expression Database

Potri.012G006501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27660 121 / 3e-35 unknown protein
AT5G54150 115 / 4e-33 unknown protein
AT4G28690 105 / 4e-27 unknown protein
AT5G54148 96 / 6e-26 unknown protein
AT2G20310 94 / 7e-23 RIN13 RPM1 interacting protein 13 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G003200
[exp]
277 / 2e-96 AT4G27660 117 / 3e-33 unknown protein
Potri.002G255400
[exp]
110 / 2e-28 AT4G28690 138 / 2e-35 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032928
[exp]
132 / 2e-39 AT4G27660 122 / 4e-35 unknown protein
Lus10015578
[exp]
119 / 8e-35 AT4G27660 111 / 2e-31 unknown protein
Lus10014249
[exp]
105 / 6e-27 AT2G20310 141 / 7e-37 RPM1 interacting protein 13 (.1)
Lus10025944
[exp]
105 / 7e-27 AT2G20310 143 / 1e-37 RPM1 interacting protein 13 (.1)
Lus10000498
[exp]
103 / 3e-26 AT2G20310 124 / 1e-30 RPM1 interacting protein 13 (.1)
PFAM info
Representative CDS sequence
>Potri.012G006501.1 pacid=42782604 polypeptide=Potri.012G006501.1.p locus=Potri.012G006501 ID=Potri.012G006501.1.v4.1 annot-version=v4.1
ATGGAGGTTAAAGAAGAAGAAGGGACTATCAAAACAGCAGTGATTGAGGTAGAATCTTCACCATCTCCTGATGGGACTCCGATCAGACCCATATTTTGTT
TGAATAAAACAAACGTGGAAAACCTTAGAAAGTTAGAGGAAACTGAGGATTGCTTCATCCTTGATTTTGACCCTTCTGAAATTGACACTTCTATTCGTCG
TTTCTCCACTCTCTCCGTCTACTCCTTCAGTGATGATGATGGTGATGGTGGTGACCTCTCTGTTGTTGCTGAAAAAGGCCAGGTGGCTTGTAGGGATTAT
CCACACTCAAGGCATCTTTGTATCAAATTCCCATTTGATAAAACCCCACATGAGAGCTACTGTGAACTGTGTTATTGCTATGTTTGTGATTGTGCCGCTC
CATGTAAGGACTGGAAGGATTCTGAATCAGCTCATTGCAATGCTTCAGAGAAAATTGGTGATTGGAAGGAACAAAGGTGGCTGAAGAGAAAGGAAGAGAT
CAAACTTCCAAATTCATAG
AA sequence
>Potri.012G006501.1 pacid=42782604 polypeptide=Potri.012G006501.1.p locus=Potri.012G006501 ID=Potri.012G006501.1.v4.1 annot-version=v4.1
MEVKEEEGTIKTAVIEVESSPSPDGTPIRPIFCLNKTNVENLRKLEETEDCFILDFDPSEIDTSIRRFSTLSVYSFSDDDGDGGDLSVVAEKGQVACRDY
PHSRHLCIKFPFDKTPHESYCELCYCYVCDCAAPCKDWKDSESAHCNASEKIGDWKEQRWLKRKEEIKLPNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27660 unknown protein Potri.012G006501
[exp]
0 1
AT5G50870 UBC27 ubiquitin-conjugating enzyme 2... Potri.015G103400
[exp]
1.00 0.8884
AT1G16170 unknown protein Potri.003G186400
[exp]
3.16 0.8591
AT5G14670 ATARFA1B ADP-ribosylation factor A1B (.... Potri.013G005500
[exp]
4.89 0.8506
AT1G51200 A20/AN1-like zinc finger famil... Potri.006G056500
[exp]
6.24 0.8674
AT2G40110 Yippee family putative zinc-bi... Potri.008G067100
[exp]
6.48 0.8550
AT5G21070 unknown protein Potri.009G158800
[exp]
8.94 0.8835
AT1G19310 RING/U-box superfamily protein... Potri.002G133000
[exp]
9.16 0.8445
AT4G01710 ARPC5, CRK CROOKED, ARP2/3 complex 16 kDa... Potri.002G136500
[exp]
9.48 0.8476 CRK.2
AT1G47830 SNARE-like superfamily protein... Potri.005G238701
[exp]
10.58 0.8659
AT2G28370 Uncharacterised protein family... Potri.009G014600
[exp]
11.00 0.8463

Potri.012G006501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.