Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49470 171 / 1e-53 NACA2 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) AT4G10480 168 / 3e-52 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1), Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.2) AT1G33040 159 / 8e-49 NACA5 nascent polypeptide-associated complex subunit alpha-like protein 5 (.1) AT3G12390 150 / 3e-45 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) AT5G13850 146 / 6e-44 NACA3 nascent polypeptide-associated complex subunit alpha-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003300 [exp] 196 / 3e-63 AT3G49470 172 / 4e-54 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.001G034400 [exp] 152 / 4e-46 AT3G12390 204 / 5e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.003G190800 [exp] 150 / 2e-45 AT3G12390 204 / 7e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.006G032000 [exp] 145 / 2e-43 AT3G12390 215 / 2e-71 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015579 [exp] 188 / 6e-60 AT3G49470 260 / 1e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10032927 [exp] 184 / 2e-58 AT3G49470 260 / 2e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10026133 [exp] 154 / 1e-47 AT3G12390 204 / 2e-68 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10041610 [exp] 154 / 3e-47 AT3G12390 229 / 7e-77 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10024109 [exp] 150 / 3e-46 AT3G12390 198 / 1e-65 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10008687 [exp] 135 / 1e-37 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [poplar] [flax] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Potri.012G006700.3 pacid=42783788 polypeptide=Potri.012G006700.3.p locus=Potri.012G006700 ID=Potri.012G006700.3.v4.1 annot-version=v4.1 ATGTCACCCGGTCCCGTCGTTGAGGCTGAACCCGCCGCCGCCGCCGCCACTGCTGAGGAGGTCACCTCCACTGTGGAAGATACACAGCAGAAGAAGCCTC CTCAGCAGGACGTGGATGAACCTGTGGTGGAGGACGTGAAAGAAGATGAGAAGGAAGAGGACGATGATGATGATGATGAGGACGATGATGATGAAGATGA TGACAAGGATGATGATACCCCAGGTGCTAATGGGAGTTCCAAGCAGAGCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGTTGAAGCTTGGCATGAAACCT GTTACTGGTGTTAGCAGGGTCACCATCAAGAGAACCAAAAATATACTGTTTTTTATCTCAAAGCCTGATGTCTTCAAGAGCCCAAATTCTGAGACCTATA TCATATTTGGAGAGGCAAAGATAGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCTCAGCAGTTTAGGGTGCCAGACATGTCATCTATGTTACCAAA ACCAGATGCTTCTACTGCAGCTGCTGCTGCACCAGCAGATGAAGAAGAGGAAGAAGTCGATGAGACAGGGGTTGAGCCTAGGGACATTGATCTTGTTATG ACACAGGCTGGAGTTTCTAGGAGCAAGGCTGTCAAGGCTCTCCAGACGAATAATGGGGACATTGTCAGTGCTATCATGGAGCTTACTACTTAG
AA sequence Show only first row Show all	>Potri.012G006700.3 pacid=42783788 polypeptide=Potri.012G006700.3.p locus=Potri.012G006700 ID=Potri.012G006700.3.v4.1 annot-version=v4.1 MSPGPVVEAEPAAAAATAEEVTSTVEDTQQKKPPQQDVDEPVVEDVKEDEKEEDDDDDDEDDDDEDDDKDDDTPGANGSSKQSRSEKKSRKAMLKLGMKP VTGVSRVTIKRTKNILFFISKPDVFKSPNSETYIIFGEAKIEDLSSQLQTQAAQQFRVPDMSSMLPKPDASTAAAAAPADEEEEEVDETGVEPRDIDLVM TQAGVSRSKAVKALQTNNGDIVSAIMELTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49470		NACA2	nascent polypeptide-associated...		Potri.012G006700 [exp]	0	1
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	1.73	0.8544
AT4G35850			Pentatricopeptide repeat (PPR)...		Potri.001G341400 [exp]	4.24	0.8289
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.017G078200 [exp]	4.89	0.8207
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.011G155700 [exp]	7.34	0.8209
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.003G181200 [exp]	7.74	0.7841
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Potri.007G039700 [exp]	9.16	0.8044
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.006G190900 [exp]	12.48	0.7242
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.010G002300 [exp]	12.96	0.7788	Pt-RPL3.3
AT5G60390			GTP binding Elongation factor ...		Potri.010G218600 [exp]	13.00	0.7807
AT5G64670			Ribosomal protein L18e/L15 sup...		Potri.016G002400 [exp]	14.14	0.7951

Compare expression of checked genes

Potri.012G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.