Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 291 / 2e-97 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G15180 285 / 3e-95 Peroxidase superfamily protein (.1) AT3G01190 273 / 3e-90 Peroxidase superfamily protein (.1) AT2G18150 270 / 6e-89 Peroxidase superfamily protein (.1) AT4G11290 269 / 6e-89 Peroxidase superfamily protein (.1) AT2G18140 269 / 1e-88 Peroxidase superfamily protein (.1) AT5G42180 266 / 1e-87 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G51890 266 / 1e-87 Peroxidase superfamily protein (.1) AT5G06730 265 / 9e-87 Peroxidase superfamily protein (.1) AT3G21770 263 / 3e-86 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003500 [exp] 552 / 0 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 491 / 3e-176 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 291 / 2e-97 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 287 / 9e-96 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 283 / 2e-94 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 281 / 9e-94 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 281 / 1e-93 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 281 / 1e-93 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 279 / 1e-92 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032926 [exp] 417 / 4e-147 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015580 [exp] 313 / 4e-107 AT1G05260 221 / 5e-71 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10028736 [exp] 309 / 1e-104 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10009990 [exp] 295 / 1e-98 AT2G41480 233 / 2e-74 Peroxidase superfamily protein (.1) Lus10028688 [exp] 295 / 1e-98 AT4G11290 265 / 5e-87 Peroxidase superfamily protein (.1) Lus10038055 [exp] 291 / 5e-97 AT2G41480 243 / 2e-78 Peroxidase superfamily protein (.1) Lus10038054 [exp] 285 / 9e-95 AT5G51890 264 / 7e-87 Peroxidase superfamily protein (.1) Lus10039680 [exp] 276 / 8e-92 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027163 [exp] 275 / 4e-91 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 274 / 2e-90 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.012G006800.3 pacid=42784282 polypeptide=Potri.012G006800.3.p locus=Potri.012G006800 ID=Potri.012G006800.3.v4.1 annot-version=v4.1 ATGGTGAGTTCCAAGAAGCTAACTCAACTGTGTGTAACTTTTTGGGTGGCAGTCCTGTTTTGTCAAAGTGTGCAATCTCATCTTCAAGTAGGGTTCTATA GAAATTCATGCGGGAGGGCTGAGTCCATTGTGAGAGGTGCTGTTAGAGATGCTCTCAGGCTGGATAGAGGGGTGGCTGCTGGTCTTGTGAGACTGCACTT TCATGATTGTTTTGTTAGGGGTTGCGAAGGATCTGTGCTTCTTGACTCCACCTCGTCAAACAAAGCAGAAAAGCACTCTACTGCAAACTACCCTAGTCTG CGTGGCTTTGAAGTCATTGACGACGCAAAGGCTAGACTAGAAGCCGAGTGTCAAGGAGTCGTTTCGTGTGCTGATATACTCGCATTTGCAGCGAGGGATA GCTTTGATTTAACTGGAGGGTTTGACTATGATGTTCAAGCAGGAAGAAGAGATGGCATAGTTTCACTAGCCTCGGAGACTTACTCCAACTTACCTCCCCC AACCTTTAATGTCGATCAACTCACTCAGAGATTTTCAGACAAGGGTTTAACTCAAGAAGAAATGGTTACACTCTCTGGAGCACACACCATCGGTAATTCA CATTGCAGGTCCTTCACTTATAGATTATACAACTTCAGTGGCACAAATAGCCAAGACCCAAGTTTAGATTCCCAATATGCAGCCAGTCTGAGGAAGAGTT GCCCGCAAGATAGTACAGATCCTAACTTGGAGGTGCCAATGGACACTCGTACTCCAACCATCAGTGATGTAAATTACTACAAGGATATACTGGCAAACCG AGGCTTGTTCAGTTCAGATCAAATTCTCTTGACCAACCCAGCAACAGCAAGTGAAGTGAAATCGAATGCAAGGAGTCCTTCAGGTTGGAAGAAAAAATTT GCTGCAGCAATGGTGAAAATGGGCCAGATTGAAGTTCTGACAGGAAACAAAGGAGAGATTCGGGCAAATTGTAGGGTAATCAACAGCTGA
AA sequence Show only first row Show all	>Potri.012G006800.3 pacid=42784282 polypeptide=Potri.012G006800.3.p locus=Potri.012G006800 ID=Potri.012G006800.3.v4.1 annot-version=v4.1 MVSSKKLTQLCVTFWVAVLFCQSVQSHLQVGFYRNSCGRAESIVRGAVRDALRLDRGVAAGLVRLHFHDCFVRGCEGSVLLDSTSSNKAEKHSTANYPSL RGFEVIDDAKARLEAECQGVVSCADILAFAARDSFDLTGGFDYDVQAGRRDGIVSLASETYSNLPPPTFNVDQLTQRFSDKGLTQEEMVTLSGAHTIGNS HCRSFTYRLYNFSGTNSQDPSLDSQYAASLRKSCPQDSTDPNLEVPMDTRTPTISDVNYYKDILANRGLFSSDQILLTNPATASEVKSNARSPSGWKKKF AAAMVKMGQIEVLTGNKGEIRANCRVINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.012G006800 [exp]	0	1
					Potri.004G148100 [exp]	1.00	0.9853
AT3G13310			Chaperone DnaJ-domain superfam...		Potri.006G001301 [exp]	2.00	0.9843
AT1G65820			microsomal glutathione s-trans...		Potri.017G140900 [exp]	4.47	0.9691
AT1G80440			Galactose oxidase/kelch repeat...		Potri.001G178300 [exp]	4.58	0.9614
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218700 [exp]	5.19	0.9737
AT3G29970			B12D protein (.1)		Potri.004G117300 [exp]	5.29	0.9695
AT2G44310			Calcium-binding EF-hand family...		Potri.002G219000 [exp]	7.74	0.9673
AT2G44310			Calcium-binding EF-hand family...		Potri.002G218201 [exp]	10.19	0.9570
AT3G03270			Adenine nucleotide alpha hydro...		Potri.017G144301 [exp]	12.00	0.8668
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108601 [exp]	12.72	0.9305

Compare expression of checked genes

Potri.012G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.