Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49490 105 / 1e-22 unknown protein AT1G33050 61 / 6e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003700 [exp] 1754 / 0 AT3G49490 107 / 2e-23 unknown protein Potri.001G452300 [exp] 90 / 6e-18 AT1G33050 63 / 6e-10 unknown protein Potri.003G206701 [exp] 52 / 5e-08 AT3G49490 49 / 4e-08 unknown protein Potri.002G230100 [exp] 47 / 4e-06 AT3G49490 45 / 6e-07 unknown protein Potri.004G080501 [exp] 42 / 0.0001 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015581 [exp] 320 / 7e-91 AT3G49490 91 / 5e-18 unknown protein Lus10032925 [exp] 262 / 3e-71 AT3G49490 92 / 3e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G007000.4 pacid=42783245 polypeptide=Potri.012G007000.4.p locus=Potri.012G007000 ID=Potri.012G007000.4.v4.1 annot-version=v4.1 ATGATGGGTTCTGGGGTTCCTTATGGTTACAATAATGGAGGTGGATCATCATTTTCCTCTTCAAATTTATCACCTTTAGCCCCGCCTTTCACTGTTGATA GGTCTGTAGCAAAACCCCTTTTGGATTTAACTGAGCCCACTTATCCTGTTAGTTTGAATCCCTCTTTACACAATTGGGCTACCTCTAACTCTCACATTCC CAATTCAAGACCCGATCTTTTTCCCCTTCCCAACCTGGAATTTAATTCCATACCGTCCCCAAATGTGTTTGGATACTCATCTCCTACTCCCCAGGTGACG TCTAAGAACCACCCTCTTGTTTTGGCATCGACTGATGCTGTTTTGTATGGTCAGAGTAACCCTAGCCTTGTTGAAGCTGTACCGTATTATCCGTCCTCGT ATGTCTCGCCTGCAATTGGTAGTGATGGTCACTTGAAAATCCCCCACCAATCTGGTTATGAATTGCTGTCTAATTCTTATGTTGGAACGTCTAATGGATC ATCTCACGATGATTATACTCAAAGCTCATTGGGTTTGGAGCATGCGACTCAGTGGAGTGGCTTATGGGAGGGAGTTACTGATTGGAATCAGAGCAAAAAA TTGCAACTTGATGGAGGTTTTTGTGAGAAGGAGAATTTTATTAATCAAGGGTTTTCTGCATTCAAAGATGTGAGCAAATGTGAAGAAACTTCCCTTGGAA TTGACATGGTTGGAAGGCAAATGCACACCGGGTCTGCAAGCACAGGACAACTGGATTATAAAGCCTTCCTTGTTGAAAAACCCAAGTCCATGCCTACAAC ACCACCATCATTGATATTCCCTCCAACAGCACCACAAGCCTATCCTCAAGTGTCATCCTCAAATGTAGTCAATTCTCCGAACAATCAAATGCGGCATGTC ACTTCATATGGAAAGTCCTCAAGGAAGCGTGATGCTAGTTCAAATGATAGGATGCCAATGATGAAGCCTTCACCTGCTGTTGTCATTAGACCCCCGGGAC AAGATAGATATTCATTTAAAAATATAAATGCTGGTACTGATGGTGATGAGAAGGATTTTGCTGGCAATAACACCTCTTTTGCGCAAGAGCCTAATCCATT TATTAGCTCCAAAGGCAAAGTTTGCTATGATTCCAGCCAAGTTAATTTTCATCTGAAACAAAATGATGATTCCTTTGCAGAAGTTCCCTCCAAAAACCAT GAAGAGTTGCTTAGCAACAAAAATATTTCTATTGATTTCTTGGATAAACTTTTCAGAGAAAAAATGGAAAATAGAGTTCCTTGCAAAAATCTAGATTTCT TCAATTTGGCTATGGATGGTCATGAGGCTGCTGGTTCTGTAGAAATTACTTCTGAGAGTTTAGATCATTACTTCCCTGCTGTGGACTCGCCATGCTGGAA AGGGGCTCCAGTTTCTCTTCCATCTGCATTCAAAGGTTCTGAGGTTGTGAATCCACAGAATAAGGTAGAGGCATGCAATGGCTTGAATCTGCAAGGCCCT CAGATTTCCCCTTCCACTACTAATGATGCTGTAAAAGACTGCCCTGAGAAACAAAGTAATATCTCCATGACCTTCAATAATGAGAGTCTGGAGCATCGTC CAGCCTCTTCTTTTAAGAGGCCTTTAGTTGCTAATGTGTTGTTTAGAGAAGGAATTGATGATGCTGTGAAATATGGACCCTGCCAAAGGAAATCAAGCTA TTGCAATGAAGCTCAAATTTCTGATGTCATTGATGAACCTAGGAAAGAAAGTATACTGCCTGATTTTAAACCTGTCCACACTAAGCAGAAAAGTCTTGAA GAAGGTGAATGGCCATCTAAGAAAAATTCTGATGTTGCAGGTGTTAGAAGGAAAATCAACGACAACCCTGATGATTGTTCATCTCATGTGCCATATCATG CTATAGAACATGTCTTATGTTCACCACCTTCCTCAGAACATGCTCCTGCTCAGCACACTCAATCACAGGTTGGGGAATCATCGTCAAAGATGCATGCTCG AACACTTGTTGATACAATGCACAACCTCTCAGAATTGCTTCTATTTTATTCTTCAAATGACACTTGTGAATTGAAGGATGAAGATTTTGATGTTCTTAAC GATGTGATCAACAATCTTGATATTTTTATATCCAAGAATTCAGAAAGGAAGAATTCAACACAAGAATCATTGATTCCTCGGCGAGCCACTTCTCAATCTC CTGGAAAGTTATCTGAGCTTTACAAGGGCCAACTTGAGTTCCAGCATTTTGAGGACGAGAAAGAGTGTAAAATTGTGTCTGATGAGAGAAAGGAGAAACT GTCAAATTTCGTTTCTATGAGGGGTGCTACAGATACAGTCAAAGACGATAACGTGACCCAGGCTATAAAGAAGGTTCTTGCCCAGAATTTTCCGATCAAA GAAGAATCAGAGTCTCAAATTCTTCTGTATAAGAATCTATGGCTTGAAGCAGAAGCTTCACTATGTGTGGTGAATTGTATGGATCGCTTTAATCGATTGA AGATAGAGATAGAGAAAGGCAGCTCCCAAAAAGTAAATGAATTTTCTTCTGCAGCCCCAGTTGTACCTGAAAATTCTATGATCATGGAGAATCTTTTGGG GCCTAAGGTTTCATCTGACATATTGCCTGCTGAAGATGAGGGTAGCCCTGTTCACAATGTTCCAGATTCATCTATCTTGAGCAGAAACAGCCATTCAGAT GATGTCATGGCCAGATTTCATATCATAAAAAGCCGGGTTGATGACTCTAATTCTCTGAATACTTCAGCCATGGATTTGTCAAGTCCTAAGGTTTCTCCTG ATCTGAACAAGGTTGACAAATTTGCACATGACACAAAAGATAGCTCTAAGTCCCATATATCTTTCCAGGATTCTATAAGGGGAGCAAGCAGTCATGCAGA TAATGTTATGGACAGATTTCATATCTTAAAATGCCGGGTTGAAAACTCTAGTTCTGTGAATACAGCAACTGGGGGGATATTGGCAAGTTCTATGGTTTCT CCTGATCAGAACCAGGTTGACAAGTTGGCACATGATACAAAAGATAGCATCATGTCCTATACCATCCAGGATTCCCCTATGTCAGGAAGGAGCAGCCATG CAGATGATGTTATGACCAGATTTTGTATTTTAAATGGCCGGGATGACAACTCTAATTCTGTGACTATATCAGCTGTAGAGAAATTGTCAAGTTCCAAGGT TTCCTCTGATCTGAACAAGGTCAGCAAATTGACAGATGATACAAAAGATAGCATAAAGGCAGATGTAACCACCCAGGATTCTTCCATGTCAAGTGCATCA AGCCAGGCAGAAGATGTTGAAGCATCTGTTATTTTGAAACACAGGGATGGCAATTCAAGTTCCTTGGATATGGAAGAGCACCAGCGAGTGAGTATTGATA ATGGGTACATGGATCTGATAAGGCTTGCTCGAATGAATAAAGATGGAACGAAAGATAGAACTTTGGATGTAAATATGGAACCTCTCATCCCAAATTTTCG AGCTGACTCTACTGAAGACAAACCTACTGTGAAGGAGTTTCGTTTATTCATAAATGATGATGTTGAGACTCAATCTCGCCTCACCGATAGGTTCGGAGAC CAATCCCATGCTGGCTGGTATGATAGCTGTTCCTCAGATTGGGAACATGTCTTGAAGGAAGAGCTTGCAGGGCAGGGTTATTAA
AA sequence Show only first row Show all	>Potri.012G007000.4 pacid=42783245 polypeptide=Potri.012G007000.4.p locus=Potri.012G007000 ID=Potri.012G007000.4.v4.1 annot-version=v4.1 MMGSGVPYGYNNGGGSSFSSSNLSPLAPPFTVDRSVAKPLLDLTEPTYPVSLNPSLHNWATSNSHIPNSRPDLFPLPNLEFNSIPSPNVFGYSSPTPQVT SKNHPLVLASTDAVLYGQSNPSLVEAVPYYPSSYVSPAIGSDGHLKIPHQSGYELLSNSYVGTSNGSSHDDYTQSSLGLEHATQWSGLWEGVTDWNQSKK LQLDGGFCEKENFINQGFSAFKDVSKCEETSLGIDMVGRQMHTGSASTGQLDYKAFLVEKPKSMPTTPPSLIFPPTAPQAYPQVSSSNVVNSPNNQMRHV TSYGKSSRKRDASSNDRMPMMKPSPAVVIRPPGQDRYSFKNINAGTDGDEKDFAGNNTSFAQEPNPFISSKGKVCYDSSQVNFHLKQNDDSFAEVPSKNH EELLSNKNISIDFLDKLFREKMENRVPCKNLDFFNLAMDGHEAAGSVEITSESLDHYFPAVDSPCWKGAPVSLPSAFKGSEVVNPQNKVEACNGLNLQGP QISPSTTNDAVKDCPEKQSNISMTFNNESLEHRPASSFKRPLVANVLFREGIDDAVKYGPCQRKSSYCNEAQISDVIDEPRKESILPDFKPVHTKQKSLE EGEWPSKKNSDVAGVRRKINDNPDDCSSHVPYHAIEHVLCSPPSSEHAPAQHTQSQVGESSSKMHARTLVDTMHNLSELLLFYSSNDTCELKDEDFDVLN DVINNLDIFISKNSERKNSTQESLIPRRATSQSPGKLSELYKGQLEFQHFEDEKECKIVSDERKEKLSNFVSMRGATDTVKDDNVTQAIKKVLAQNFPIK EESESQILLYKNLWLEAEASLCVVNCMDRFNRLKIEIEKGSSQKVNEFSSAAPVVPENSMIMENLLGPKVSSDILPAEDEGSPVHNVPDSSILSRNSHSD DVMARFHIIKSRVDDSNSLNTSAMDLSSPKVSPDLNKVDKFAHDTKDSSKSHISFQDSIRGASSHADNVMDRFHILKCRVENSSSVNTATGGILASSMVS PDQNQVDKLAHDTKDSIMSYTIQDSPMSGRSSHADDVMTRFCILNGRDDNSNSVTISAVEKLSSSKVSSDLNKVSKLTDDTKDSIKADVTTQDSSMSSAS SQAEDVEASVILKHRDGNSSSLDMEEHQRVSIDNGYMDLIRLARMNKDGTKDRTLDVNMEPLIPNFRADSTEDKPTVKEFRLFINDDVETQSRLTDRFGD QSHAGWYDSCSSDWEHVLKEELAGQGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49490			unknown protein		Potri.012G007000 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	3.00	0.9099
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	4.69	0.9087
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	6.70	0.8960
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	6.92	0.9016
AT3G09100			mRNA capping enzyme family pro...		Potri.006G096000 [exp]	7.00	0.8933
AT2G47210	MYB		myb-like transcription factor ...		Potri.014G117400 [exp]	7.74	0.8851
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	8.24	0.8979	CPC902,TTN8.3
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.001G057200 [exp]	10.53	0.8505
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	11.22	0.8632	Pt-SPL1.4
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.001G199200 [exp]	11.22	0.8945	MYA1.1

Compare expression of checked genes

Potri.012G007000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.