Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24580 250 / 8e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G50740 108 / 1e-27 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G63530 105 / 6e-26 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT3G02960 88 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1) AT1G29000 82 / 5e-18 Heavy metal transport/detoxification superfamily protein (.1) AT2G36950 82 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1) AT5G03380 73 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G60800 72 / 5e-14 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28090 60 / 2e-10 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 57 / 9e-10 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003900 [exp] 289 / 4e-97 AT5G24580 247 / 1e-80 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.016G006600 [exp] 119 / 7e-32 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.015G099500 [exp] 112 / 1e-28 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 105 / 9e-27 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 100 / 4e-24 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.016G017600 [exp] 91 / 1e-21 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G007600 [exp] 90 / 2e-20 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G178800 [exp] 85 / 5e-19 AT1G29000 115 / 1e-30 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G093100 [exp] 86 / 6e-19 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032923 [exp] 265 / 1e-87 AT5G24580 313 / 1e-106 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10015583 [exp] 259 / 2e-85 AT5G24580 314 / 6e-107 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10038785 [exp] 101 / 4e-25 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 100 / 6e-25 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10012867 [exp] 95 / 3e-21 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10022617 [exp] 87 / 6e-19 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10021516 [exp] 86 / 8e-19 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014421 [exp] 86 / 1e-18 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016133 [exp] 77 / 1e-15 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10037044 [exp] 75 / 2e-15 AT3G02960 137 / 6e-40 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.012G007300.4 pacid=42782913 polypeptide=Potri.012G007300.4.p locus=Potri.012G007300 ID=Potri.012G007300.4.v4.1 annot-version=v4.1 ATGGGTGAAGAAGCTAAGCAGGAACAAGCCAAGGCAGAGGCTAAGCCAGAGGAGAAGAAGAAAGAAAACGCAGAGGAGAAGAAAGAAGAGAAACCAGCAG AGGAAGAAGAGAAGGAAGAACCAAAGCCACCATCTCCATTTGTCTTGTTTGTGGACTTGCATTGTGTGGGATGTGCCAAGAAGATTGAGAGGTCCATCAT GAAGATTAGAGGTGTGGAGGGGGTTGCGATGGATATGGCACAAAACCAAGTGACTATAAAGGGAATAGTGGAACCTCAAGCTGTGTGTAATAAAATCATG AAGAAAACCAAAAGAAGAGCTAAAGTTTTGTCTCCATTGCCTGAAAATGAGGGTGAACCAATGCCCCAAGTTGTTACTTCACAGGTAAGTGGATTAACAA CTGTGGAGCTTCATATCAACATGCACTGTGAAGCATGTGCAGAGCAACTTAAGAAAAAGATTCTCAAAATGAGAGGAGTGCAAACTGCAGTGACAGATTT TAGCAGCAGCAAAGTCACAGTGACTGGGACAATGGAGGCAAACAAACTAGTGGAATATGTTTATATACGCACCAAAAAGCAGGCCAGGATAGTGCCACAA CCTGAGCCTGAGCCTGAACCAGCAAAGGAAGAGGAGAAAAAAGAAGAAGAGAAACCAGCAGAAGAAGCAAAACCAGCTGAAGAGAAGAAAGAAGAGGAAA AACCAGCAGAAGAAGGTGGTGGTGGTGGTGAAAACCCTGAAAAAAATGAGAAGAAAGAAGATGAAGGGAAGAAGGAAGGAGTAGAAAATATAGACATCAT CAACGTTGATGAGGAAAACATGAAGAGAATGATGCATTATTACCATCCACTGTATGTGATAGAGAGAATACCACCTCCTCAGTTATTCAGTGATGAGAAT CCCAATGCATGTTGCATTTCATGA
AA sequence Show only first row Show all	>Potri.012G007300.4 pacid=42782913 polypeptide=Potri.012G007300.4.p locus=Potri.012G007300 ID=Potri.012G007300.4.v4.1 annot-version=v4.1 MGEEAKQEQAKAEAKPEEKKKENAEEKKEEKPAEEEEKEEPKPPSPFVLFVDLHCVGCAKKIERSIMKIRGVEGVAMDMAQNQVTIKGIVEPQAVCNKIM KKTKRRAKVLSPLPENEGEPMPQVVTSQVSGLTTVELHINMHCEACAEQLKKKILKMRGVQTAVTDFSSSKVTVTGTMEANKLVEYVYIRTKKQARIVPQ PEPEPEPAKEEEKKEEEKPAEEAKPAEEKKEEEKPAEEGGGGGENPEKNEKKEDEGKKEGVENIDIINVDEENMKRMMHYYHPLYVIERIPPPQLFSDEN PNACCIS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24580			Heavy metal transport/detoxifi...		Potri.012G007300 [exp]	0	1
AT5G24580			Heavy metal transport/detoxifi...		Potri.015G003900 [exp]	1.00	0.8744
					Potri.007G093850 [exp]	4.58	0.8095
AT2G26490			Transducin/WD40 repeat-like su...		Potri.014G038400 [exp]	4.89	0.7742
AT5G50740			Heavy metal transport/detoxifi...		Potri.016G006600 [exp]	6.32	0.8444
AT4G08850			Leucine-rich repeat receptor-l...		Potri.003G108200 [exp]	8.48	0.8007
AT2G35215			unknown protein		Potri.001G142250 [exp]	9.00	0.8033
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.009G123900 [exp]	13.85	0.7405
AT3G57980			DNA-binding bromodomain-contai...		Potri.001G013600 [exp]	13.96	0.7877
AT5G57970			DNA glycosylase superfamily pr...		Potri.001G044402 [exp]	18.02	0.7935
AT2G22795			unknown protein		Potri.007G008600 [exp]	18.49	0.8422

Compare expression of checked genes

Potri.012G007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.