Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54140 548 / 0 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT3G02875 429 / 2e-148 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT1G51760 419 / 1e-144 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G56660 410 / 6e-141 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51780 407 / 7e-140 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT1G44350 398 / 9e-136 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT5G56650 389 / 9e-133 ILL1 IAA-leucine resistant (ILR)-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G004000 [exp] 745 / 0 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.002G082400 [exp] 459 / 6e-160 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.016G074100 [exp] 454 / 6e-158 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.005G178900 [exp] 450 / 5e-156 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.006G207400 [exp] 437 / 8e-152 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.010G035900 [exp] 437 / 4e-151 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.003G045200 [exp] 436 / 5e-151 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 430 / 9e-149 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032963 [exp] 602 / 0 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10015388 [exp] 501 / 1e-176 AT5G54140 461 / 7e-161 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10030659 [exp] 450 / 1e-156 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 444 / 4e-154 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 436 / 8e-151 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10037601 [exp] 433 / 9e-150 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 432 / 2e-149 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10025668 [exp] 423 / 1e-145 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10016998 [exp] 412 / 2e-141 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10021321 [exp] 411 / 3e-141 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF01546 [poplar] [flax] Peptidase_M20 Peptidase family M20/M25/M40 CL0035 [poplar] [flax] PF07687 [poplar] [flax] M20_dimer Peptidase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.012G007400.1 pacid=42784329 polypeptide=Potri.012G007400.1.p locus=Potri.012G007400 ID=Potri.012G007400.1.v4.1 annot-version=v4.1 ATGGGAACTTTTTTGTATTTGATACTATTCCAAGTCCTTCTTTCAGTACTTGTATGTTTTGATTCATCTCAGTCCACTTTCGATCGGCAAACCTATAGAG AACATCTTCTAAGCTCATCCCAACGAGACAAGGACTGGTTAATAACCATTAGAAGGCAAATTCATGAGAATCCAGAACTCAGATTTGAGGAACACAATAC CAGTGCTCTTATTAGAAGTGAACTTGATAAACTTGCTATTTCTTACACATACCCACTTGCCAAAACTGGGATTGTTGCTCAAATTGGCTCTGGTTCACCT CCTGTTGTTGCTCTTCGTGCTGACATGGATGCACTTCCCCTGCAAGAGCTTGTGGAGTGGGAGCATAAGAGTAAAGTTGATGGAAAAATGCATGGATGTG GTCATGATGCTCATACCACTATGCTCCTTGGTGCTGCTAAGTTGCTTAATGAAAGGAAACATCTGCTTAAGGGAACGGTGAGACTTCTTTTCCAACCTGC TGAGGAGGGAGGTGCTGGTGCATCACATATGATAAAAGATGGTGCCCTTGGTGATGCTGAAGCCATATTTGGGATGCACGTTAATTACAAGATACCCACT GGAACCATAGCATCCTTGTCAGGGCCAGTCTTTGCTGCAGCATCCCGCTTTCAAGTAAAAATAGAAGGCAGAGGTGGGCATGCTGCAGTACCCCATAATG CTGTGGATCCACTACTTGCTGCGTCATTTGCAATTTTGGCATTGCAACAGCTCATCTCTAGAGAACTGGATCCCCTCCAGAGTCAGGTTCTATCTATTAC GTATGTCAGAGGAGGGACTACTTTGAATGTAATTCCACCATATTTTGAATTTGGGGGCACCCTGAGGAGTCTTACGACTGAGAGCTTACATCAACTCCAG CGGAGGTTGAAAGAGGTTGTTGAAGGCCAGGCAGCTGTCCACAGATGTCATGCGCACGTAGACATGTACGAAAAGGAAGATGTTCCCCTATATCCTGCTA CCGTGAATGATGAAAAATTGAATTTGCATGTTGAGAGGGTTAGTAGACTTCTTTTTAATCCAGAGAATTTCAAGATGGGTCAGAAGGTGATGGCAGCTGA GGACTTTTCCTTCTATCAAGAAGTGATTCCTGGAGTCATGCTCGATATTGGAATTAGAAATGAAAACGTGGGTGCAATTCACTCCCTACACTCACCTTAC TTCTTTCTTGATGAGGACGTTCTTTCAATTGGGGCAGCATTGCACACTGCCCTGGCAGAGATTTATCTGAATGAGCATCAACAATCTGCAGCACAGTAG
AA sequence Show only first row Show all	>Potri.012G007400.1 pacid=42784329 polypeptide=Potri.012G007400.1.p locus=Potri.012G007400 ID=Potri.012G007400.1.v4.1 annot-version=v4.1 MGTFLYLILFQVLLSVLVCFDSSQSTFDRQTYREHLLSSSQRDKDWLITIRRQIHENPELRFEEHNTSALIRSELDKLAISYTYPLAKTGIVAQIGSGSP PVVALRADMDALPLQELVEWEHKSKVDGKMHGCGHDAHTTMLLGAAKLLNERKHLLKGTVRLLFQPAEEGGAGASHMIKDGALGDAEAIFGMHVNYKIPT GTIASLSGPVFAAASRFQVKIEGRGGHAAVPHNAVDPLLAASFAILALQQLISRELDPLQSQVLSITYVRGGTTLNVIPPYFEFGGTLRSLTTESLHQLQ RRLKEVVEGQAAVHRCHAHVDMYEKEDVPLYPATVNDEKLNLHVERVSRLLFNPENFKMGQKVMAAEDFSFYQEVIPGVMLDIGIRNENVGAIHSLHSPY FFLDEDVLSIGAALHTALAEIYLNEHQQSAAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Potri.012G007400 [exp]	0	1
					Potri.002G155700 [exp]	2.64	0.8735
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G216200 [exp]	4.24	0.8491
					Potri.010G007250 [exp]	4.47	0.8652
AT5G23850			Arabidopsis thaliana protein o...		Potri.003G125000 [exp]	4.69	0.8210
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.006G146400 [exp]	6.92	0.8468
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Potri.001G018800 [exp]	7.07	0.8466
AT4G32140			EamA-like transporter family (...		Potri.006G266400 [exp]	9.94	0.8112
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Potri.001G239900 [exp]	12.64	0.7835
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Potri.006G083100 [exp]	14.59	0.7861
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.005G130800 [exp]	15.87	0.8381

Compare expression of checked genes

Potri.012G007400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.