Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24590 306 / 4e-98 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G49530 306 / 1e-97 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT1G33060 301 / 9e-94 NAC ANAC014 NAC 014 (.1.2) AT4G35580 283 / 3e-88 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G65910 221 / 1e-63 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G17260 213 / 3e-62 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G17730 204 / 2e-61 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G03200 210 / 4e-61 NAC ANAC045 NAC domain containing protein 45 (.1) AT3G10500 198 / 6e-56 NAC ANAC053 NAC domain containing protein 53 (.1) AT4G17980 189 / 2e-55 NAC ANAC071 NAC domain containing protein 71 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G004100 [exp] 709 / 0 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.011G149300 [exp] 315 / 2e-98 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.001G452700 [exp] 298 / 2e-92 AT1G33060 415 / 7e-137 NAC 014 (.1.2) Potri.015G030200 [exp] 203 / 4e-61 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.017G139500 [exp] 212 / 6e-60 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.004G081000 [exp] 209 / 5e-59 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.010G174600 [exp] 199 / 2e-58 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.003G089800 [exp] 199 / 6e-58 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.012G038100 [exp] 196 / 8e-58 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032919 [exp] 355 / 2e-115 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10015587 [exp] 350 / 2e-113 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10008285 [exp] 307 / 6e-97 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 290 / 4e-90 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 266 / 4e-81 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10042284 [exp] 209 / 2e-62 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 207 / 7e-62 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 215 / 4e-61 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 216 / 5e-60 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10010959 [exp] 200 / 4e-56 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.012G007500.1 pacid=42783253 polypeptide=Potri.012G007500.1.p locus=Potri.012G007500 ID=Potri.012G007500.1.v4.1 annot-version=v4.1 ATGGCTGTTTTCTCTTTGAACTTGAATTCACTGCCCTTAGGCTTTAGATTCAGACCATCAGATGAAGAACTAGTTAATTACTACTTAAGACACAAAATCA ATGGAAAAGATGATAAAGTTAGAGTTATTCGTGAAATCGATGTCTGCAAATGGGAACCTTGGGACTTACCAGGCTTGTCGATAATAGAGAACAAGGATCC AGAGTGGTTTTTTTTCTGTCCATTAGACAGGAAGTATCCAAATGGATCGAGGCAGAATAGAGCAACAAATGCTGGGTATTGGAAGGCAACTGGCAAGGAT AGGAAGATAAAGTCTGGAAATAGATTGATTGGAATGAAGAAGACTCTAGTATTTTATACTGGACGTGCTCCTAAGGGGAAGAGGACTAATTGGGTTGTGC ATGAGTATCGTGCTACTGAAGAGGAGCTTGATGGAACTAAGCCTGGCCAGAGTGCCTTTGTTCTTTGTCGTTTGTTTAAGAAACAAGATGAGAGCATTGA GAGTCCGAACTGTGATGAAGCTGAAGCTACTGTTTCGTCTCCGACCACAGCTCAATCGTCTCCAGAAGTTACACAATCTGATCAACCACTGACTGAAGCA TCTCCGGCAAATACAACAACCTCTGAGGTTGTAGCGCCAGTTGAATTTCCAAGCTGCAGCGTTGGTGTTTCTGAAGGAGGAGATCAAACTGCTGATTTAC CCGCTTCTGAGGAGGAGCTACAGCTGGAAGAAGCCTTGAATTGGTTATTTGACTCCCCACCACAGGCTCTAGATTACGAACTTTTTCCACCAGTCCATGA GCAGGTCCAAGAAGCAGTGGGATCTTCCTCCATGTTTAATCATGGCAACAACGATTTGAGCAGCAGTAACAGAGGGCTGCAATCTCATAATGTTGGAAAT GAAACAGATGACTATACCTCTGAATTCATTGATTCCATACTTAAGCAGCCAGATGAACTCTTTTATGAGGTGCCTAGCTTTCAGAACAATTCATCATTTC CAAGTGAGAGCCTTTTTAGGGGCAGCTTGCTCCGTGTTGTTGAGGACAATGTATCTTACAGTGGCTCGGATGTTGACATGGAACCAATTAGGATTGAACA AGGGTTTCAGGGTGCTGTCTTTCCTGAGGGGAACATTGACGAGAAGCCTTCTTCAACTCTGCTTTATGATAGTAATGTGCATCAGCAGCCGATCTATCTG GGTTCATTACAAAATGGATCTTACGCCCTGCAAAGTGTAGCATCAATTTCTGCCACAGACCAGCTCAATACTCTCAACAAACCAAGCAACAGTACGAATG AAGTTGGTGGTAGTGACACTAATTGGAATGGAATAAGGACCAGGGTTCACAATCCACGAAATCGACAATTTGGCAGGAATTTCAATACACAAGGTGATGC ACCAAGAAGATTGCGTCTGCAGTGTAAGCTCCAAGTCCAACCAATTCAGTTCAGCACAAAGTCAGAAGATTTTAACTCTGGAGAAGGAGAACTTGAATAC GAGTGTATTGTGACAAAGGAGATCAAAGTTAGTGAAACCAATGCCATGGATGAAGACAGTTATACTAATGCCATGGATGAACAGCTGAAACCTACCCTTG TCAAAGTTAGTGAAACCATTAAATTTTCTGAAGAACTGATACCTAACAATGGAACAGCCGTGAAGAATAATCGTTCTATGCTCAGCAAGGTTTCATTTAT GTTCTCGAAGGCTTCTTCTGCTTGTGATTCCATCTGGTCGATTACCATGTTTAGGGTAGCTGTTTTAGCAGTTTTGTTTGCAGTCTCAGTGAGCAGATGT AGATACTTTTTTCTCGATACCGCTTAG
AA sequence Show only first row Show all	>Potri.012G007500.1 pacid=42783253 polypeptide=Potri.012G007500.1.p locus=Potri.012G007500 ID=Potri.012G007500.1.v4.1 annot-version=v4.1 MAVFSLNLNSLPLGFRFRPSDEELVNYYLRHKINGKDDKVRVIREIDVCKWEPWDLPGLSIIENKDPEWFFFCPLDRKYPNGSRQNRATNAGYWKATGKD RKIKSGNRLIGMKKTLVFYTGRAPKGKRTNWVVHEYRATEEELDGTKPGQSAFVLCRLFKKQDESIESPNCDEAEATVSSPTTAQSSPEVTQSDQPLTEA SPANTTTSEVVAPVEFPSCSVGVSEGGDQTADLPASEEELQLEEALNWLFDSPPQALDYELFPPVHEQVQEAVGSSSMFNHGNNDLSSSNRGLQSHNVGN ETDDYTSEFIDSILKQPDELFYEVPSFQNNSSFPSESLFRGSLLRVVEDNVSYSGSDVDMEPIRIEQGFQGAVFPEGNIDEKPSSTLLYDSNVHQQPIYL GSLQNGSYALQSVASISATDQLNTLNKPSNSTNEVGGSDTNWNGIRTRVHNPRNRQFGRNFNTQGDAPRRLRLQCKLQVQPIQFSTKSEDFNSGEGELEY ECIVTKEIKVSETNAMDEDSYTNAMDEQLKPTLVKVSETIKFSEELIPNNGTAVKNNRSMLSKVSFMFSKASSACDSIWSITMFRVAVLAVLFAVSVSRC RYFFLDTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Potri.012G007500 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	1.00	0.8977
					Potri.017G077100 [exp]	2.44	0.8634
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.004G089400 [exp]	5.65	0.7559
AT3G61790			Protein with RING/U-box and TR...		Potri.001G026200 [exp]	6.92	0.7608
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Potri.005G257900 [exp]	7.87	0.7181
AT1G49850			RING/U-box superfamily protein...		Potri.009G091200 [exp]	8.24	0.7938
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.001G218800 [exp]	8.36	0.7920
AT5G57580			Calmodulin-binding protein (.1...		Potri.005G020200 [exp]	9.48	0.7480	CBP60.7
AT2G04305			Magnesium transporter CorA-lik...		Potri.001G285300 [exp]	10.24	0.7762
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Potri.003G081500 [exp]	11.83	0.7566

Compare expression of checked genes

Potri.012G007500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.