Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54130 721 / 0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) AT1G02270 569 / 0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) AT3G18500 64 / 5e-11 DNAse I-like superfamily protein (.1.2.3) AT3G58560 61 / 1e-09 DNAse I-like superfamily protein (.1) AT1G73875 59 / 3e-09 DNAse I-like superfamily protein (.1) AT5G11350 57 / 2e-08 DNAse I-like superfamily protein (.1) AT3G58580 49 / 4e-06 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G004200 [exp] 832 / 0 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.014G108200 [exp] 625 / 0 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 607 / 0 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.018G032300 [exp] 54 / 1e-07 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.016G061700 [exp] 50 / 3e-06 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 48 / 1e-05 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005145 [exp] 580 / 0 AT1G02270 572 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) Lus10030173 [exp] 576 / 0 AT1G02270 568 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) Lus10010095 [exp] 573 / 0 AT1G02270 570 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) Lus10008086 [exp] 59 / 4e-09 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10013119 [exp] 59 / 5e-09 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10036357 [exp] 56 / 3e-08 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 56 / 5e-08 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10012293 [exp] 56 / 6e-08 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 55 / 9e-08 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 50 / 4e-06 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.012G007600.1 pacid=42782929 polypeptide=Potri.012G007600.1.p locus=Potri.012G007600 ID=Potri.012G007600.1.v4.1 annot-version=v4.1 ATGACAAGGGAAAGGAGATCAAGAAGGATATCAAGAATAGGGAGTTATGCAATATCATCATCAATGTCAATGAGAGATCATCGGCAACAACCTTGTATAA CTTGTACAACGTTTAACATTCTTGCACCTATCTATAAACGTCTTAACATTAACAATGATAAGGATCAGAATTCACGTGAAAGTGATTACAGGGCCTATTG GCTTGTCAGAAACCAGAGGATTTTGGATTCCTTGTTGCGTGAAAGATCTTCCATAATTTGTCTTCAGGAATTTTGGTTGGGAAATGAAGAGTTGGTCAAC ATGTATGAGAAGAGATTAGGTGATGCAGGCTATCTCAATTTCAAGCTTGCACGAACCAACAACCGTGGTGATGGCCTACTGATCGCTGTGCGCAAGGACT ATTTCAGAGTTATTAACCATAGGGAATTGTTGTTCAATGATTGCGGGGATCGAGTTGCTCAGTTGTTACATGTTGAATTAGCTGCTCCTTGTTCACCATG CCGGAACAATGACACTCGCCAAGAAATTCTCATTGTCAATACCCACTTGTTATTTCCTCATGATTCAAGTTTGTCTCTTGTGAGATTGAATCAGGTCTAC AAAATCCTGCAGTATGTGGAATCTTATCAGAAAGAAAACAAGCTTAGCCCAACGCCTATTATGCTTTGCGGTGACTGGAATGGGAGCAAACGGGGGCATG TTTACAAGTTCCTCAGGTCACAAGGCTTTGTATCATCATATGATACTGCTCATCAGTACACTGATGCAGATGCTCACAAGTGGGTTAGCCACCTTAATCA TCGTGGAAATATTTGTGGCGTGGATTTTATATGGCTTCTTAATCCCAATAGATACCGCAAGCTACTAAAAACAAGTTGGAGTGAAGCAGTATTTGGCATG TTCAAGTATCTGCTACGGAGAGCTTCCCTGACAGAAGAAGATGCCTTTGCCTTTCTAAAGGCTGATAGTGATAGTGACTGCATTACCTACTCAGGCTTCT GTGAAGCTCTTCAACAGCTTAACTTAACCGGCCACTGTTATGGACTTAGCGACGAAGAAACAAAGGATTTGTGGGTGCAGGCAGACATTGATGGGAATGG TGTTCTTGATTATAAAGAATTTCAGCAGCGAATTTGGAATCCTACATGGTCAGAGGAGAAAGATGATGAAATCCAAGACGATAATCTTAAGGGTAGAGAA GAGCAAACAATTGGTTTCAGTGTGGAGAATGCTGTTCTCTTCCCTCCTGAAGTAGAGAAAGGAATGTGGCCTGAGAACTACTCTCTTTCAGATCATGCCC GACTAACGGTGGTGTTCTCACCAATAAGAATGCCATGCTCACAATTGATATCATGA
AA sequence Show only first row Show all	>Potri.012G007600.1 pacid=42782929 polypeptide=Potri.012G007600.1.p locus=Potri.012G007600 ID=Potri.012G007600.1.v4.1 annot-version=v4.1 MTRERRSRRISRIGSYAISSSMSMRDHRQQPCITCTTFNILAPIYKRLNINNDKDQNSRESDYRAYWLVRNQRILDSLLRERSSIICLQEFWLGNEELVN MYEKRLGDAGYLNFKLARTNNRGDGLLIAVRKDYFRVINHRELLFNDCGDRVAQLLHVELAAPCSPCRNNDTRQEILIVNTHLLFPHDSSLSLVRLNQVY KILQYVESYQKENKLSPTPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADAHKWVSHLNHRGNICGVDFIWLLNPNRYRKLLKTSWSEAVFGM FKYLLRRASLTEEDAFAFLKADSDSDCITYSGFCEALQQLNLTGHCYGLSDEETKDLWVQADIDGNGVLDYKEFQQRIWNPTWSEEKDDEIQDDNLKGRE EQTIGFSVENAVLFPPEVEKGMWPENYSLSDHARLTVVFSPIRMPCSQLIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54130			Calcium-binding endonuclease/e...		Potri.012G007600 [exp]	0	1
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110200 [exp]	1.00	0.9110
AT5G07820			Plant calmodulin-binding prote...		Potri.012G067100 [exp]	6.48	0.8825
AT1G52330			Late embryogenesis abundant (L...		Potri.001G180600 [exp]	8.94	0.8787
AT4G05030			Copper transport protein famil...		Potri.006G002000 [exp]	10.09	0.8822
AT2G14095			unknown protein		Potri.017G050000 [exp]	11.31	0.8814
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.001G404400 [exp]	13.49	0.8666	Pt-ATNAC2.2
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Potri.010G107900 [exp]	16.12	0.7926	Pt-CABP1.2
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.002G155400 [exp]	17.43	0.8628
AT5G62960			unknown protein		Potri.012G082400 [exp]	17.74	0.7968
					Potri.009G135000 [exp]	19.44	0.8488

Compare expression of checked genes

Potri.012G007600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.