Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07050 199 / 3e-60 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 197 / 2e-59 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 192 / 1e-57 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 191 / 5e-57 WAT1 Walls Are Thin 1 (.1.2) AT1G44800 190 / 5e-57 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G30340 179 / 8e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 178 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01440 177 / 4e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 174 / 9e-51 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G43650 171 / 4e-50 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108600 [exp] 204 / 2e-62 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G182700 [exp] 203 / 6e-62 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 194 / 1e-58 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 194 / 2e-58 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.014G108500 [exp] 192 / 8e-58 AT3G30340 361 / 8e-124 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 192 / 9e-58 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 190 / 4e-57 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 189 / 3e-56 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 189 / 4e-56 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030168 [exp] 217 / 3e-67 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007862 [exp] 215 / 1e-66 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 200 / 3e-60 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 199 / 1e-59 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10031437 [exp] 196 / 4e-59 AT1G09380 438 / 8e-154 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 194 / 5e-58 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 193 / 7e-58 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020819 [exp] 191 / 5e-57 AT1G25270 262 / 6e-85 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 193 / 2e-56 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020817 [exp] 186 / 5e-55 AT1G25270 274 / 8e-90 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.012G007700.1 pacid=42784280 polypeptide=Potri.012G007700.1.p locus=Potri.012G007700 ID=Potri.012G007700.1.v4.1 annot-version=v4.1 ATGGAGGGAGGGAGGGTAAAGAAATGTTTTGTCTCATCACAAGCAGTGATGGGCATGTTGATGGTTCAAGTGATGGCAACAGGAATGCAATTGCTTTCCA AAATCATATTGAATAATGGAACATTTGTGCTTGCACTTATGACCTATAGGCATATAGTTGCTGCCGTTTGCATGGCTCCCTTTGCTTTCTACTTTGAAAG AGGCATGATCAAAAGTAAGATGAATTGGTCTGTTTTTTTCTGGCTTTTTGTTAATTCCTTGTGTGGGATATTGTTTGCTATGGGATTGTTCTATTACGGT CTCAAAGATACCTCAGCTACATATGCTGTCAACTTCCTCAACTTGGTCCCAATAGTAACCTTTGTTTTCTCCATCATCTTGAGACTTGAGAAATTAGGAC TGAGTACTCGAGCGGGGAAAATCAAGATATCAGGAGCCATATTATGCGTTTCAGGAGCTATGATAGCTTGTCTTTACAAGGGAAGAACATTCCACCTTAT TCATAAAACTCTTCAACATCATGTTCAAGTCAAGTCATCTGTGCTTCATAAGACTCGTGGTACAATCTTGCTCATTGGCAGTTGCTTGTCTTATTCTTCA TGGTATATATTGCAGGCCAAATTGCTCAAGGTTTTCCCATTCAAATATCATACAACCATGATCACTTGTATCTTCGCTTCCATCCAATCAGCAGCAATAG GTCTATGCATTGATAGAAGTAACGCTGCTTGGAAGCTAGAGTGGAATCTGCAGCTACTTACCATCATCTACTCAGGATCCTTAGCCTCAGCTGCAACATT TTGCTTGATTAGTTGGGCTGTTGTTAGAAGAGGCCCTTCTTATCCTCCTATGTTCAACCCATTGACACTAATTTTTGTGGCAGTTTTGGAAGCTCTCATA ATTGGTGCGGAAATCACTGCTGGCCAATTGCTGGGCATGGTTTTGATAATAATCGGTTTGTACTCCTTTTTGTTGGGAAAAACCAAGGAGATGAAAAACA TGCCCAAGTCGAATATAGAAGCTGCAGAAGCTGCCACGACAGTAGAATCTACAAAGGTTCAGCCAGCTTCTCCTCTTACTACCACTAATGAAGACATAGA ATCTGGTTCTGTCAAGGATGTTGTAAATCCTTGA
AA sequence Show only first row Show all	>Potri.012G007700.1 pacid=42784280 polypeptide=Potri.012G007700.1.p locus=Potri.012G007700 ID=Potri.012G007700.1.v4.1 annot-version=v4.1 MEGGRVKKCFVSSQAVMGMLMVQVMATGMQLLSKIILNNGTFVLALMTYRHIVAAVCMAPFAFYFERGMIKSKMNWSVFFWLFVNSLCGILFAMGLFYYG LKDTSATYAVNFLNLVPIVTFVFSIILRLEKLGLSTRAGKIKISGAILCVSGAMIACLYKGRTFHLIHKTLQHHVQVKSSVLHKTRGTILLIGSCLSYSS WYILQAKLLKVFPFKYHTTMITCIFASIQSAAIGLCIDRSNAAWKLEWNLQLLTIIYSGSLASAATFCLISWAVVRRGPSYPPMFNPLTLIFVAVLEALI IGAEITAGQLLGMVLIIIGLYSFLLGKTKEMKNMPKSNIEAAEAATTVESTKVQPASPLTTTNEDIESGSVKDVVNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.012G007700 [exp]	0	1
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	2.44	0.9563
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	2.82	0.9070
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G027800 [exp]	3.00	0.9554
					Potri.012G028432 [exp]	4.47	0.9481
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	5.00	0.9391
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.004G002500 [exp]	5.91	0.7533
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Potri.008G023800 [exp]	7.74	0.8388
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003600 [exp]	8.30	0.8071
AT3G15200			Tetratricopeptide repeat (TPR)...		Potri.011G115500 [exp]	8.83	0.7449
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Potri.010G044500 [exp]	9.48	0.9068

Compare expression of checked genes

Potri.012G007700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.