Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25440 227 / 1e-62 AtRLP20 receptor like protein 20 (.1) AT2G33060 229 / 2e-62 AtRLP27 receptor like protein 27 (.1) AT2G33020 221 / 2e-59 AtRLP24 receptor like protein 24 (.1) AT2G32660 213 / 2e-58 AtRLP22 receptor like protein 22 (.1) AT3G25010 211 / 4e-56 AtRLP41 receptor like protein 41 (.1) AT3G25020 211 / 6e-56 AtRLP42 receptor like protein 42 (.1) AT3G05660 206 / 1e-54 AtRLP33 receptor like protein 33 (.1) AT2G15042 198 / 5e-54 Leucine-rich repeat (LRR) family protein (.1) AT1G71390 202 / 9e-54 AtRLP11 receptor like protein 11 (.1) AT2G33050 202 / 1e-53 AtRLP26 receptor like protein 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031251 [exp] 708 / 0 AT1G45616 380 / 1e-115 receptor like protein 6 (.1) Potri.012G007932 [exp] 706 / 0 AT1G45616 370 / 6e-112 receptor like protein 6 (.1) Potri.010G010100 [exp] 696 / 0 AT1G47890 320 / 3e-94 receptor like protein 7 (.1) Potri.012G025100 [exp] 623 / 0 AT3G11080 343 / 4e-103 receptor like protein 35 (.1) Potri.011G055200 [exp] 622 / 0 AT3G25020 312 / 6e-92 receptor like protein 42 (.1) Potri.012G027400 [exp] 607 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G028101 [exp] 601 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.011G054500 [exp] 600 / 0 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.012G029000 [exp] 597 / 0 AT3G05660 373 / 2e-114 receptor like protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032335 [exp] 222 / 9e-60 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 217 / 5e-58 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10026415 [exp] 214 / 1e-56 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10002214 [exp] 206 / 2e-56 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10003389 [exp] 213 / 3e-56 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 212 / 8e-56 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10011039 [exp] 208 / 4e-54 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10011064 [exp] 206 / 4e-54 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10004309 [exp] 192 / 1e-53 AT1G47890 225 / 6e-66 receptor like protein 7 (.1) Lus10016402 [exp] 195 / 8e-52 AT1G47890 313 / 4e-94 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0027 [poplar] [flax] RdRP PF07727 [poplar] [flax] RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) CL0027 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0027 [poplar] [flax] PF13976 [poplar] [flax] gag_pre-integrs GAG-pre-integrase domain
Representative CDS sequence Show only first row Show all	>Potri.012G007800.2 pacid=42783365 polypeptide=Potri.012G007800.2.p locus=Potri.012G007800 ID=Potri.012G007800.2.v4.1 annot-version=v4.1 ATGGGGTTTACACCACCGTGCCTCTCTCAATCTCTCTTTTTCATTCTGTTTCTCTTCCATTTCCACTCAACAATTTCATCTCCACTCTCCTCGAATTACC AATCTCTTTCTCTCCTTCAATTCAAACAATCCTTCTCCATTGATAGTTCTGCTTCATCAGAGTACTGTCAATATCCCTTGCCAAAAACAGAGTCATGGAA AGAGGGTACAGACTGCTGCTTGTGGGATGGGGTCACTTGTGACCTGAAAACCGGGCATGTCACTGGACTGGACCTCTCTTGCAGCATGCTTTACGGCACC CTCCTTCCCAATAATTCTCTCTTCTCTCTCCATCATCTTCAACAGCTCGACCTCTCTTTCAATGATTTCAACACCTCCCATATTTCTTCTCGATTTGGCC AGTTCTCCAATCTAACACATCTTAACCTAAGTGGTTCAGATCTTGCAGGCCAAGTTCCGTCAGAAATCTCTCACCTCTCCAAAATGGTTTCACTTGATCT CTCTTGGAACTACGATCTAAAACCAATTTCCTTTGACAAGCTTGTTCGAAACCTAACCAAGCTTAGAGAACTCGATCTGAGTTCGGTAGACATGTCACTA CTTGTTCCCGATTCCTTGATGAATCTGTCTTCTTCTCTGTCATCACTCAAACTCATTGACTGTAGATTGCAAGGAAAACTCCCATCCTTAATGGGGAAAT TTAAGCACCTCCAGTACTTGCGTCTTCGAGGGAACAATCTTACTGGTTCAATTCCATGTGATTTTGAGCAACTCATAGAGTTGGTTTCACTTGATCTCTC TGAAAACTTCTATCTAAGTCCAGAACCAATTTGTTTTGACAAGCTTGTTCGAAACTTAACCAAGCTTAGAGAACTCAATTTGGCTTCTGTAAATATGTCT TTGGTTGCACCTAATTCCTTGACCAATCTGTCCTCTTCTTTGTCATCTCTCTCCCTCGGTAAGTGTGGATTGCAGGGGAAATTCCCGGGTAACATCTTTC TCCTCCCAAACCTTGAATTTCTCTATTTGTCAAACAACGAAGGCCTTACTGGCTCTTTTCCTTCGTCCAATTTGAAAAACGACTTAATCAGTAATCTAAA GTCATTAGAATATATGTCTCTTCGTAATTGTAACATTATAAGGTCAGATCTGGCTCTGCTTGGTAATCTCACACAGCTCACCTATTTAGATCTCTCAAGT AACAATTTTATAGGTGAGATCCCATCATCAATTGGAAACAATACCTTTTCAAATTTAAAATATCTATTATTATTTGATAACTTGTTCAATGGAACAATAC CATCCTTTTTGTTTGCTCTTCCCTCTTTACAATTTCTTAACCTTCATAACAATAATCTCATAGGCAATATAAGTGAATTCCAACACCATTCATTGGTAAA CCTTGATTTGAGCAGTAACCACTTGCATGAGAACTTGGAAGCCCTCATTCTTGTGTCCAATAGTAAATTGACAGGTGAGATTTCTTCTTCTATTTGCAAG CTGAGATCCCTTGAGGTCCTAGACTTGTCCGACAACAGCTTGAGTGGTTCTATACCATTATGTTTGGGGAACTTCAGCAGCAAGCTCTCAGTATTAATCA AGAAGAAACAATCTCAGCAACAAATACAACAACAAGCAAATGTTTCTGAAGAAGGCAAAGATGATGAGGAGCATCTGTTTATGGCATCACAAGCTAGCAA TACTTCTGAGCTAAATACATGGCTTATAGACAGTGGCTGCACTAGTCACATGTCTAAGTTTCTGTCAATCTTTTCTTCTATTGACAGATCAGTTCAACCA AAAATCAAGCTGGGAAATGGAGATATTGTGCAGGCTAAGGGAAAAGGTACTGTTGCGGTCAGCACAAATAGAGGTACTAAAACCATCACAAATGTTCTTT ACATTCCAGAACTAGATCAAAATCTCCTTAGTGTTGCACAGATGCTTAGGAATGGTTATGAAGTCTCTTTTAAAGAGAAATTTTGCTTTATCACTGATTC ACATAATTCAGAGATAGCAAAAATCAAAATGGATGGTAATAGCTTCTATTTGAAGCTTGATGCTGTTAAAGGACATGTGTTTAGTGCTAAGATTGATGAA AGCATTCTTTGGCATAAAAGATTTGGTCATTACAATCTCAATTCATTAAAGTTGTTGTATGATGCTGGAATGGTAGAAAACATGTCTGAAATTCATGTTA CTGCTCATACATGTGGAAGCTGTGAACTGGGAAAGCAACACCGACAACCATTTCCCAAAGTTCAACAAGACATTGGAGCAACTTCAGACACAGCAGTACT TAAAGTTAGGCCATTGTCTGATGTGTACGAAAGATGTAATCTTGTACATGCTGAGCCTACAAACTATACTGAAGCTGCAGGAGTTCCAGCTTGGATTGAA GCAATGAAATCAGAAATTGATTCCATTGAAAGAAATGGGACTTGGAGATTGACTGAACTTCCTGAAGATAAAAAGGAAATTGGAGTGAAGTGGGTCTTCA GAACCAAATTCAATCCAGATGGTTCAATCTTCAAACACAAGGCTAGATTGGTTGTTAAAGGCTTTGCTCAAGTTGCTGGAGTGGATTATGGAGATACTTT TGCACCAGTAGCTAGGCATGACACTATAAGACTCCTACTTGCTCTTGCAGGACAAAAAGGATGGAGAGTATATCATTTAGATGTTAAGTCTGCTTTTCTA AATGGAATACTTCTTGAAGAAATTTATGTTCAGCAACCAGAAGGCTTTGTAGTTGCTGGCATGAACAATCTTCAAGGCACTATCCCTTCAACATTTTCAA AGGGTAATAGCTTGGAATATCTCGACCTCAATGGAAATGAATTAGAAGGGGAAATATCACCATCTATCATCAACTGCACAATGTTGGAAGTTCTTGATCT TGGCAACAATAAGATTGAGGATACATTTCCTTATTTTCTAGAAACGCTTCCGGAGCTGCAAATTCTAATTCTAAAATCCAATAACCTCCAAGGTTTTGTG AAGGGTCCGACTGCAGATAATTCCTTCTTTAAATTATGGATTTTTGACATCTCTGACAATAATTTTAGTGGGCCGTTGCCAACAGGGTATTTTAATACTC TTGAAGCAATGATGATCTCAGATCAAAACATGATTTACCTTAACACGACAAATGACATTGTCTGTGTTCATTCCATAGAAATGACATGGAAAGGTGTAGA AATTGAGTTTCCGAAGATCCGAAGTACCATCAGAGTACTAGATTTGTCAAATAACAGTTTTACTGGAGAGATTCCAAAGGTGATCGGAAAGCTTAAAGCA CTACAACAACTCAACCTCTCTCATAATTTCCTTACAGGTCATATCCAATCATCAGTGGGAAATTTGACCAATTTGGAATCATTAGACCTATCTTCAAATT TGCTTACCGGAAGGATTCCAATGCAGATGGCACATCTAACATTTCTTGCAACCCTAAACCTTTCACATAACCAGCTGGAGGGGCCCATACCAAGTGGAGA GCAATTCAACACCTTTGATGCAAGATCATTTGAAGGAAACTCGGGTTTATGTGGCTTTCAAGTACTAAAAGAATGCTACGGTGACGAGGCACCATCATTG CCGCCATCAAGCTTTAATGAAGGAGATGATTCAACATTGTTTGGAGAAGGATTTGGATGGAAAGCTGTGACAATAGGGTATGGATGCGGGTTTCTGTTTG GAGTTGCAACGGGATACGTTGTGTTTAGAACAAATAAACCTTCATGGTTACTTAGGATGGTTGAAGATATATGGAATCTCAAGAGCAAAAACACGAAGAA GAATTTCCGCAGATATGGTGCTAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.012G007800.2 pacid=42783365 polypeptide=Potri.012G007800.2.p locus=Potri.012G007800 ID=Potri.012G007800.2.v4.1 annot-version=v4.1 MGFTPPCLSQSLFFILFLFHFHSTISSPLSSNYQSLSLLQFKQSFSIDSSASSEYCQYPLPKTESWKEGTDCCLWDGVTCDLKTGHVTGLDLSCSMLYGT LLPNNSLFSLHHLQQLDLSFNDFNTSHISSRFGQFSNLTHLNLSGSDLAGQVPSEISHLSKMVSLDLSWNYDLKPISFDKLVRNLTKLRELDLSSVDMSL LVPDSLMNLSSSLSSLKLIDCRLQGKLPSLMGKFKHLQYLRLRGNNLTGSIPCDFEQLIELVSLDLSENFYLSPEPICFDKLVRNLTKLRELNLASVNMS LVAPNSLTNLSSSLSSLSLGKCGLQGKFPGNIFLLPNLEFLYLSNNEGLTGSFPSSNLKNDLISNLKSLEYMSLRNCNIIRSDLALLGNLTQLTYLDLSS NNFIGEIPSSIGNNTFSNLKYLLLFDNLFNGTIPSFLFALPSLQFLNLHNNNLIGNISEFQHHSLVNLDLSSNHLHENLEALILVSNSKLTGEISSSICK LRSLEVLDLSDNSLSGSIPLCLGNFSSKLSVLIKKKQSQQQIQQQANVSEEGKDDEEHLFMASQASNTSELNTWLIDSGCTSHMSKFLSIFSSIDRSVQP KIKLGNGDIVQAKGKGTVAVSTNRGTKTITNVLYIPELDQNLLSVAQMLRNGYEVSFKEKFCFITDSHNSEIAKIKMDGNSFYLKLDAVKGHVFSAKIDE SILWHKRFGHYNLNSLKLLYDAGMVENMSEIHVTAHTCGSCELGKQHRQPFPKVQQDIGATSDTAVLKVRPLSDVYERCNLVHAEPTNYTEAAGVPAWIE AMKSEIDSIERNGTWRLTELPEDKKEIGVKWVFRTKFNPDGSIFKHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQKGWRVYHLDVKSAFL NGILLEEIYVQQPEGFVVAGMNNLQGTIPSTFSKGNSLEYLDLNGNELEGEISPSIINCTMLEVLDLGNNKIEDTFPYFLETLPELQILILKSNNLQGFV KGPTADNSFFKLWIFDISDNNFSGPLPTGYFNTLEAMMISDQNMIYLNTTNDIVCVHSIEMTWKGVEIEFPKIRSTIRVLDLSNNSFTGEIPKVIGKLKA LQQLNLSHNFLTGHIQSSVGNLTNLESLDLSSNLLTGRIPMQMAHLTFLATLNLSHNQLEGPIPSGEQFNTFDARSFEGNSGLCGFQVLKECYGDEAPSL PPSSFNEGDDSTLFGEGFGWKAVTIGYGCGFLFGVATGYVVFRTNKPSWLLRMVEDIWNLKSKNTKKNFRRYGARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25440		AtRLP20	receptor like protein 20 (.1)		Potri.012G007800 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G031251 [exp]	1.00	0.9988
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G007932 [exp]	1.41	0.9970
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.010G010100 [exp]	5.47	0.9572
AT2G46420			Plant protein 1589 of unknown ...		Potri.002G169900 [exp]	5.91	0.9463
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Potri.008G091900 [exp]	9.16	0.9303	WRKY3.1
AT2G23840			HNH endonuclease (.1)		Potri.019G033200 [exp]	9.89	0.9416
AT4G27290			S-locus lectin protein kinase ...		Potri.001G409300 [exp]	9.94	0.9345
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024101 [exp]	10.95	0.9420
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Potri.013G067200 [exp]	12.32	0.9496
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024052 [exp]	12.64	0.9349

Compare expression of checked genes

Potri.012G007800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.