Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33060 331 / 6e-101 AtRLP27 receptor like protein 27 (.1) AT1G71400 317 / 3e-95 AtRLP12 receptor like protein 12 (.1) AT4G13810 308 / 6e-93 AtRLP47 receptor like protein 47 (.1.2) AT3G05660 310 / 2e-92 AtRLP33 receptor like protein 33 (.1) AT3G05650 308 / 7e-92 AtRLP32 receptor like protein 32 (.1) AT1G71390 299 / 5e-89 AtRLP11 receptor like protein 11 (.1) AT3G05360 290 / 1e-85 AtRLP30 receptor like protein 30 (.1) AT4G13920 290 / 7e-85 AtRLP50 receptor like protein 50 (.1) AT2G33050 285 / 9e-84 AtRLP26 receptor like protein 26 (.1) AT4G13880 281 / 3e-83 AtRLP48 receptor like protein 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G030125 [exp] 1392 / 0 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.011G055000 [exp] 1142 / 0 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.012G026000 [exp] 1125 / 0 AT1G45616 383 / 3e-118 receptor like protein 6 (.1) Potri.012G027400 [exp] 1032 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G020600 [exp] 965 / 0 AT3G05660 372 / 2e-115 receptor like protein 33 (.1) Potri.012G028600 [exp] 944 / 0 AT1G47890 395 / 1e-120 receptor like protein 7 (.1) Potri.012G026900 [exp] 939 / 0 AT3G25010 315 / 2e-93 receptor like protein 41 (.1) Potri.012G025400 [exp] 936 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G008911 [exp] 936 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 350 / 2e-107 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 344 / 6e-105 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 298 / 4e-88 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10004310 [exp] 280 / 2e-81 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10004313 [exp] 266 / 5e-77 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10026415 [exp] 255 / 2e-71 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10011064 [exp] 251 / 4e-70 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10011039 [exp] 250 / 5e-69 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10003389 [exp] 246 / 1e-68 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 237 / 3e-65 AT1G45616 395 / 1e-121 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G008300.2 pacid=42782899 polypeptide=Potri.012G008300.2.p locus=Potri.012G008300 ID=Potri.012G008300.2.v4.1 annot-version=v4.1 ATGGGGTTTTCACCACTGTCCCTCTCTCAATCTCTCTCTTTCATTATGTTTCTCTTCCATTTCCATTCAACAATTTCTTCATCTCATTTCTGTGCTCCTG ACCAAAGTCTTTCTTTGCTCCAATTCAAAGAATCCTTTTCCATTAATAGCTCTGCTTCAGGGCGTTGCCAGCATCCCAAGACAGAGTCCTGGAAAGAGGG TACAGACTGCTGCTTGTGGGATGGGGTCTCTTGTGACATGAAAACAGGGCATGTCACTGCACTGGACCTCTCATGCAGCATGCTTTATGGCACCCTCCAT TCCAATAGCACCCTCTTCTCCCTGCATCATCTTCAAAAGCTCGACCTCTCTGACAATGATTTCAATAACTCCCATATTTCTCCTCGATTTGGCCAGTTTT CCAATCTGGCACTTCTTAACCTAAATTCCTCAGTCTTTGCAGGTCAAGTTCCGTCGGAAATCTCTCATCTCTCCAAATTGGTTTCACTTGATCTCTCTGG AAACTACGATCCAAGTCTAGAACCAATTTCTTTGGCCAAGCTGGTTCGAAATCTAACCGAACTTAGAGAACTCGATTTGAGTCGGGTAAACATGTCATTG GTTGCACCCAATTCCTTGACGAATTTGTCCTCTTCTTTGTCATCTCTTTCCCTTTGGGGTTGTGGATTGCAGGGGAAATTCCCAGGTAACATCTTTCTCC TCCCAAAGCTTGAATCACTGGATATGTCATACAACAACCGCCTCACTGGCTCTTTTCCTTCGTCCAATTTGAGTAATGTCCTCTCTTCGTTGGATCTTTC TAATACAAGAATTTCAGTTTATTTAGAAAACGACTTGATCAGTAATCTAAAGTCATTAGAATATATGTATCTCCGTAATAGTAACATTATAAGGTCAGAT TTAGCTCCGCTCGGTAATCTCACACAGCTCATCCTTTTAGACTTCTCAAGTAACAATTTTATAGGTGAAATCCCATCATTACTTGGAAACCTTGTACAAC TCCGTTACCTGAAACTCGATTCCAATAAATTTATGGGTCAGATTCCAGATTCTTTGGGTAGCCTTTTAAATCTAAGGACTCTAAGTTTATATGGTAACTT GTTCAATGGAACAATACCATCCTTTTTGTTTGCTCTTCCTTCTTTACAATATCTTGACCTTCATAACAATAATCTCATAGGCAATATAAGTGAACTCCAA CACGATTCATTGGTATACCTAGATTTGAGCAATAACCACTTGCATGGTCCGATCCCAAGTTCGATTTTCAAACAAGAGAACTTGGAAGTCCTTATTCTTG CGTCCAATAGTAAATTGACAGGTGAGATTTCTTCTTCTATTTGCAAGCTGAGATTCCTTCGGCTCCTGGACTTGTCCAACAACAGCTTGAGTGGTTCTAC GCCACTATGTTTGGGGAACTTCAGCAACATGCTCTCCGTATTGCATCTAGGCATGAACAATCTTCAAGGCACCATCCCTTCAATATTTTCAAAGAATAAT AGCTTGGAATATCTCAACCTCAATGGAAATGAATTAGAAGGGAAAATACCACCGTCTATCATCAGCTGCACATTGTTGGAAGTTCTTGATCTTGGCAACA ATAAGATTGAGGATACATTTCCCTACTTTCTAGAAACGCTTCCAAAGCTCCAAATTCTTGTCCTAAAATCCAATAAACTCCAAGGTTTTGTGAAAGGTCC GACTACATATAATTCCTTCTCTAAATTACAGATTTTTGATATCTCTGACAATAATTTTAGTGAGTCGTTGCCAACAGGTTATTTTAATAGTCTTGAAGCA ATGATGACCTTGGATCAAAACATGATTTACATGGGGGCAATAAATTACTCTAGTTATGTGTATTCCATAGAAATGATATGGAAAGGTGTAAAAACGAAGT TTATGAAGATCCAAAGTACCATCAGAGTACTCGATTTGTCAAATAACAATTTCACTGGAGAGATTCCAAAGGTGATCGAAAAACTTAAAGCACTCCAACA ACTCAACCTTTCTCATAATTCTCTTACAGGTCATATCCAATCATCATTAGGAAATTTGACCAATTTGGAATCATTAGATCTATCTTCAAATTTGCTTACT GGAAGGATTCCAATGCAATTGGAGGGTTTAACATTTCTTGCAATCCTAAACCTTTCACATAATCAACTCGAGGGGCCCATACCAAGTGGAGAGCAATTCA ACACCTTTAATGCAAACTTATTTGAAGGAAACTTGGGTTTATGTGGATTTCAAGTCCTAAAAGAATGCTACGATGATGAGGCACTATCATTGTCGCCATC AAGCTTTAATGAAGAAGATGATTCAACATTGTTTGGAGAAGGATTTGGATGGAAAGCTGTGACAATGGGGTATGGATGTGGGTTTGTGTTTGGAGTTGCT ACGGGATACGTTGTGTTTAGAACAAAAAAACCTTCATGGTTTCTTAGGATGGTTGAAGATAAATGGAATCTCAATAGCAAAAAAACAAAGAAGAATGTTG GCAGATATGGTGCTAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.012G008300.2 pacid=42782899 polypeptide=Potri.012G008300.2.p locus=Potri.012G008300 ID=Potri.012G008300.2.v4.1 annot-version=v4.1 MGFSPLSLSQSLSFIMFLFHFHSTISSSHFCAPDQSLSLLQFKESFSINSSASGRCQHPKTESWKEGTDCCLWDGVSCDMKTGHVTALDLSCSMLYGTLH SNSTLFSLHHLQKLDLSDNDFNNSHISPRFGQFSNLALLNLNSSVFAGQVPSEISHLSKLVSLDLSGNYDPSLEPISLAKLVRNLTELRELDLSRVNMSL VAPNSLTNLSSSLSSLSLWGCGLQGKFPGNIFLLPKLESLDMSYNNRLTGSFPSSNLSNVLSSLDLSNTRISVYLENDLISNLKSLEYMYLRNSNIIRSD LAPLGNLTQLILLDFSSNNFIGEIPSLLGNLVQLRYLKLDSNKFMGQIPDSLGSLLNLRTLSLYGNLFNGTIPSFLFALPSLQYLDLHNNNLIGNISELQ HDSLVYLDLSNNHLHGPIPSSIFKQENLEVLILASNSKLTGEISSSICKLRFLRLLDLSNNSLSGSTPLCLGNFSNMLSVLHLGMNNLQGTIPSIFSKNN SLEYLNLNGNELEGKIPPSIISCTLLEVLDLGNNKIEDTFPYFLETLPKLQILVLKSNKLQGFVKGPTTYNSFSKLQIFDISDNNFSESLPTGYFNSLEA MMTLDQNMIYMGAINYSSYVYSIEMIWKGVKTKFMKIQSTIRVLDLSNNNFTGEIPKVIEKLKALQQLNLSHNSLTGHIQSSLGNLTNLESLDLSSNLLT GRIPMQLEGLTFLAILNLSHNQLEGPIPSGEQFNTFNANLFEGNLGLCGFQVLKECYDDEALSLSPSSFNEEDDSTLFGEGFGWKAVTMGYGCGFVFGVA TGYVVFRTKKPSWFLRMVEDKWNLNSKKTKKNVGRYGARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G008300 [exp]	0	1
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G030125 [exp]	1.00	0.9656
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040132 [exp]	4.00	0.9159
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Potri.006G186600 [exp]	4.47	0.8504
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.011G125900 [exp]	5.29	0.8832
AT1G14930			Polyketide cyclase/dehydrase a...		Potri.008G131200 [exp]	6.24	0.9058	MLP.3
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Potri.010G064000 [exp]	9.48	0.8752	Pt-MYB305.2
AT5G48540			receptor-like protein kinase-r...		Potri.011G029500 [exp]	13.74	0.8283
					Potri.002G144101 [exp]	14.28	0.8344
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G010850 [exp]	14.42	0.8344
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Potri.014G132600 [exp]	15.09	0.8563

Compare expression of checked genes

Potri.012G008300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.