Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13920 325 / 5e-97 AtRLP50 receptor like protein 50 (.1) AT3G05650 303 / 6e-89 AtRLP32 receptor like protein 32 (.1) AT2G33060 272 / 3e-78 AtRLP27 receptor like protein 27 (.1) AT2G32660 264 / 3e-77 AtRLP22 receptor like protein 22 (.1) AT2G25440 264 / 1e-76 AtRLP20 receptor like protein 20 (.1) AT2G33020 263 / 1e-74 AtRLP24 receptor like protein 24 (.1) AT1G71400 262 / 1e-74 AtRLP12 receptor like protein 12 (.1) AT3G25010 259 / 2e-73 AtRLP41 receptor like protein 41 (.1) AT2G33050 254 / 7e-72 AtRLP26 receptor like protein 26 (.1) AT4G13810 251 / 1e-71 AtRLP47 receptor like protein 47 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G027400 [exp] 1330 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G014625 [exp] 1275 / 0 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G028101 [exp] 1245 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G010445 [exp] 1243 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G026900 [exp] 1189 / 0 AT3G25010 315 / 2e-93 receptor like protein 41 (.1) Potri.012G025100 [exp] 1188 / 0 AT3G11080 343 / 4e-103 receptor like protein 35 (.1) Potri.012G029000 [exp] 1186 / 0 AT3G05660 373 / 2e-114 receptor like protein 33 (.1) Potri.011G054500 [exp] 1182 / 0 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.011G055200 [exp] 1181 / 0 AT3G25020 312 / 6e-92 receptor like protein 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 364 / 9e-112 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 361 / 2e-110 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10026415 [exp] 284 / 5e-81 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003389 [exp] 281 / 5e-80 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002214 [exp] 261 / 6e-77 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10042239 [exp] 270 / 5e-76 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10011039 [exp] 264 / 4e-73 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10004310 [exp] 255 / 4e-72 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10003387 [exp] 257 / 2e-71 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10004313 [exp] 248 / 4e-70 AT2G33060 335 / 5e-103 receptor like protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G008911.1 pacid=42783561 polypeptide=Potri.012G008911.1.p locus=Potri.012G008911 ID=Potri.012G008911.1.v4.1 annot-version=v4.1 ATGGGGTTTTCACCTATTTCATCTCTCTCTTTCTTTCTGTTTCTCTTCCATTTCCATTCAACAATTTCTTCATCTGATTTCTGTGCTCTTGACCAAAGTC TTTCTTTGCTCCGATTCAAAGAATCCTTTTCCATTAATAGCTCTGCTTCAGTGCTTTGCCAGCATCCCAAGACAGAGTCGTGGAAAGAGGGTATAGACTG CTGCTTGTGGGATGGGATCACTTGTGACCTGAAAACCGGGCATGTCACTGTACTGGACCTCTCTTGCAGCATGCTTTACGGCACCCTCCATTCCAATAGC ACCCTCTTCTCCCTGCATCATCTTCAAAAGCTCGACCTCTCTGACAATCATTTCAACTTCTCCCATATTTCTTCTCGATTTGGCCAGTTCTCCAACCTGA CACATCTTAACCTAAATTACTCAATCTTTGCAGGTCAAGTTCCGTCGGAAATCTCTCATCTCTCCAAATTGGTTTCACTTGATCTCTCTAGAAACTACGA CCTAAGTCTAGAACCAATTTGTTTTGACAAGCTTGTTCGAAGCCTAACCAAGCTTAGAGAACTCGATTTGAGTAATGTAAACATGTCACTGGTTGTACCT AGTTCCTTGATGAATCTCTCTGCTTCTCTGTCATTACTCAAACTCTTTGGCTGTGGATTGGAAGGAAAACTCCCATCCTCAATGGGAAGATTTAAGCACC TCAAATACTTGGATCTCTCTATAAACTTCTATCTAAGTCTAGAACCGATTTCTTTTGACAAGATTGTTCAAAACCTAACCAAGCTAAGACATCTCGCTTT GGATTATGTAAATATGTCTCTGGTTGCACCTAATTCCTTGAAGAATCTGTCCTCTTCTTTGTCATATCTTTCCCTCAGTGGTTGTGGATTGCAGGGGAAG TTCCCGGGTAACATCTTTCTCCTCCCAAACCTTGAATCACTGGATCTGTCATACAACAAAGGCCTCACTGGCTCTTTTCCTTCGTCCAATTTGAGTAATG TCCTCTCTCTGTTGCGTCTTTCTAATACAAGAATTTCAGTTTATTTAGAAAACGACTTAATCAGTAATCTAAAGTCATTAGAATATATGTCTCTTCGTAA TTGTAACATTATAAGGTCAGATCTAACCCTGCTGGGTAATCTCACACAGCTCACCCTTTTAGACCTCTCAAGTAACAATTTTACAGGTGAGATCCCATCA TCACTTGGATACCTTCTACAGCTTCGTTCCTTGTATCTCTATTCCAATAAATTTAGGGGTCAAGTTCCAGATTTTTTGGGTAGCCTAGTTAATCTTTCAA ATTTAGATTTATCCAATAATCAACTAGTAGGCCCTTTCCATTCTCAATTAAATACTCTTTCAAATCTAAAATATCTATTTTTATCTGATAATTTGTTCAA TGGAACAATACCATCCTTTTTGTTTGCTCTTCCTTCTTTATATTATCTTGACCTTCATAACAATAATCTCATAGGTAATATAAGTGAACTCCAACACAAT TCATTGAGATTCCTTGATTTGAGCAATAACCACTTGCATGGTACAATCCCAAGTTCGATTTTCAAACAAGAGAACTTGACCGTAATTATTCTTGCGTCCA ATAGTAAATTGACAGGTGAGATTTCTACTTCTATTTGCAAGCTGAAATCCCTTCTGGTCCTGGACTTGTCCAACAACAGCTTGAGTGGTTCTATACCATT ATGTTTGGGGAACTTCAACAACATGCTCTCAGTATTGCATCTAGGCATGAACAATCTTCAAGGCACTATCCCTTCAACATTTTCAAAGGATAATAGCTTG GAATATCTCAACCTCAGTGGAAATGAATTAGAAGGGAAAATATCACCGTCTATCATCAACTGCACAAAGTTGGAAGTTCTTGATCTTGGCAACAATAAGA TTGAGGATGCATTTCCCAACTTTCTAGAAACGCTTCCAAAGCTCCAAATTCTAATTCTAAAATCCAATAAACTCCAAGGTTTTGTGAAGGGTCCGAATGC ATATAATTCCTTCTCTAAATTACAAATTTTTGACGTCTCGTACAACAATTTTAGTGGGCCATTGCCAACAAGGTATTTCAATAATCTTGAAGCAATGATG GTCTCGGATCAAAGCATGATTTACCTTAATGCAACAAATTACACTAGCTATGTCTATTCCATAAAAATGACATGGAAAGGTGTAGAATTTGAGTTTTCAA AAATCCAAAGTACCATCAGAGTACTAGATTTGTCAAGTAATAATTTTACCGGAGAGATTCCAAAGATGATCGGAAAGCTTATAGCACTTCAACAACTCAA CCTCTCTCATAATTCCCTTACAGGTCATATCCAATCATCATTAGGAATTTTGATCAATTTGGAATCATTAGATCTATCTTCAAATTTGCTTACCGGAAGG ATCCCAACGCAGCTGGGGGGTCTAACATTTCTTGCAATCCTAAACCTTTCACATAACCAACTCGAGGGGCCCATACCAAGTGGAGAGCAGTTCAACACCT TTGATGCAAGCTCATTTGAAGGAAACTTGGGTTTATGTGGATCTCAAGTACTAAAAAAATGTTACGGTGATGAGGCACGATCATTACCGCCATCAAGCTT TGATGAAGGAGATGATTCAACATTGTTTGGAGAAGGATTTGGATGGAAAGCTGTGACAGTGGGGTATGGATGCGGGTTTGTGTTTGGAGTAGCAACGGGA TACGTTGTGTTTAGAACAAAAAAGCCTTCATGGTTTCTTAGGATGGTTGAAGATAAATGGAATCTCCAGAGCAAAAAAACAAAGAAGAATGCTGGCAGAT ATGGTGCTAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.012G008911.1 pacid=42783561 polypeptide=Potri.012G008911.1.p locus=Potri.012G008911 ID=Potri.012G008911.1.v4.1 annot-version=v4.1 MGFSPISSLSFFLFLFHFHSTISSSDFCALDQSLSLLRFKESFSINSSASVLCQHPKTESWKEGIDCCLWDGITCDLKTGHVTVLDLSCSMLYGTLHSNS TLFSLHHLQKLDLSDNHFNFSHISSRFGQFSNLTHLNLNYSIFAGQVPSEISHLSKLVSLDLSRNYDLSLEPICFDKLVRSLTKLRELDLSNVNMSLVVP SSLMNLSASLSLLKLFGCGLEGKLPSSMGRFKHLKYLDLSINFYLSLEPISFDKIVQNLTKLRHLALDYVNMSLVAPNSLKNLSSSLSYLSLSGCGLQGK FPGNIFLLPNLESLDLSYNKGLTGSFPSSNLSNVLSLLRLSNTRISVYLENDLISNLKSLEYMSLRNCNIIRSDLTLLGNLTQLTLLDLSSNNFTGEIPS SLGYLLQLRSLYLYSNKFRGQVPDFLGSLVNLSNLDLSNNQLVGPFHSQLNTLSNLKYLFLSDNLFNGTIPSFLFALPSLYYLDLHNNNLIGNISELQHN SLRFLDLSNNHLHGTIPSSIFKQENLTVIILASNSKLTGEISTSICKLKSLLVLDLSNNSLSGSIPLCLGNFNNMLSVLHLGMNNLQGTIPSTFSKDNSL EYLNLSGNELEGKISPSIINCTKLEVLDLGNNKIEDAFPNFLETLPKLQILILKSNKLQGFVKGPNAYNSFSKLQIFDVSYNNFSGPLPTRYFNNLEAMM VSDQSMIYLNATNYTSYVYSIKMTWKGVEFEFSKIQSTIRVLDLSSNNFTGEIPKMIGKLIALQQLNLSHNSLTGHIQSSLGILINLESLDLSSNLLTGR IPTQLGGLTFLAILNLSHNQLEGPIPSGEQFNTFDASSFEGNLGLCGSQVLKKCYGDEARSLPPSSFDEGDDSTLFGEGFGWKAVTVGYGCGFVFGVATG YVVFRTKKPSWFLRMVEDKWNLQSKKTKKNAGRYGARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05650		AtRLP32	receptor like protein 32 (.1)		Potri.012G008911 [exp]	0	1
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.002G116300 [exp]	1.00	0.9214
AT5G25930			Protein kinase family protein ...		Potri.006G235800 [exp]	3.46	0.8997
AT5G25930			Protein kinase family protein ...		Potri.006G235500 [exp]	3.87	0.8986
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G010101 [exp]	6.92	0.8750
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.013G125000 [exp]	7.74	0.8539	Pt-ATEP3.1
AT3G57540			Remorin family protein (.1)		Potri.006G053200 [exp]	13.41	0.8423
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030519 [exp]	14.83	0.8799
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.017G017300 [exp]	14.83	0.8608	PtrGrx3
AT5G36930			Disease resistance protein (TI...		Potri.019G007884 [exp]	16.15	0.8650
					Potri.013G042750 [exp]	17.05	0.7218

Compare expression of checked genes

Potri.012G008911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.