Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27585 246 / 4e-79 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 227 / 4e-72 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G011345 [exp] 444 / 2e-158 AT4G27585 268 / 2e-87 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G005500 [exp] 414 / 8e-145 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 413 / 1e-144 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 349 / 2e-119 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032909 [exp] 258 / 1e-83 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015597 [exp] 155 / 2e-43 AT4G27585 383 / 7e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [poplar] [flax] SPFH PF01145 [poplar] [flax] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Potri.012G010001.1 pacid=42784225 polypeptide=Potri.012G010001.1.p locus=Potri.012G010001 ID=Potri.012G010001.1.v4.1 annot-version=v4.1 ATGTGGAGGAGGAGGAGTCATTTATTACTCAGCAACGCCGTAAGAACCTCCCACCACCTCTCCTCCTTATCGGCTTCCACCGCTTCCAGAGGCAGAACCC TCCTCACTCCCTCCTCCAATTCTCCCTTATTTAAATCCCCTTCTCTTCACTTAGCCCCAAACAACCGCCTTTCCTCTCCTCTCTCCTCCACCATCTCCGT CCGCCTCCTCCGCACCGGCCGCGACCCCTTCACCAGTTATGAGATTACGCCACCTGTGAATTGGGGGGTACGGATTGTGCCGGAGAAGAAAGCGTTTGTG GTTGTTACGTACCTAGTCACTAGGAATGGGTGTGCAGTATATGGAAAGAAGAAGCTAAAGACGCTGCCATCTGGAATCCATTTCTTGATTCCTCTTGTCG ATCGAATCGCTTATGTTCACTCTTTGAAGGAAGAGGCTAATCAGATTCCTGATCAATCTGCTATTACCAAAGACAATGTCAGCATTCTTATCGACGGCGT CCTCTATGAAAAGATTGTGGAGGCCATCAATGTGGCTGCAACAGACTGGGGTCTCCGATGTCTTCGTTATGAAATAAGGGATATATCTCCTCCACGTGGG GTGAAGCAAGCTATGGAGATGCAGGCAGAAGCAGAACGTAGAAAGAGAGCTCAAATTCTTGAGTCTGAAGGAGAGAGACAGGCCAATATTAATATTGCTG ATGGTCATAAGAGTGCTCAGATCTTGGCATCACAAGGAGAGAAACAAGCTCTCATCAACAAAGCACAAGGTGAGGCTGAAGCCATCATTGCTAAAGCACA AGCAACAGCCAAAGGAATTGCCATTGTGTCAGAGAATATTAAAAAGAGTGGGGGGATTGAGGTGAGGTTCTCCATGTAG
AA sequence Show only first row Show all	>Potri.012G010001.1 pacid=42784225 polypeptide=Potri.012G010001.1.p locus=Potri.012G010001 ID=Potri.012G010001.1.v4.1 annot-version=v4.1 MWRRRSHLLLSNAVRTSHHLSSLSASTASRGRTLLTPSSNSPLFKSPSLHLAPNNRLSSPLSSTISVRLLRTGRDPFTSYEITPPVNWGVRIVPEKKAFV VVTYLVTRNGCAVYGKKKLKTLPSGIHFLIPLVDRIAYVHSLKEEANQIPDQSAITKDNVSILIDGVLYEKIVEAINVAATDWGLRCLRYEIRDISPPRG VKQAMEMQAEAERRKRAQILESEGERQANINIADGHKSAQILASQGEKQALINKAQGEAEAIIAKAQATAKGIAIVSENIKKSGGIEVRFSM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G010001 [exp]	0	1
AT4G01040			Glycosyl hydrolase superfamily...		Potri.014G096700 [exp]	6.16	0.7881
AT3G15390		SDE5	silencing defective 5 (.1.2)		Potri.011G051300 [exp]	9.64	0.7655
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	10.14	0.8427
					Potri.011G093901 [exp]	11.00	0.7530
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.004G164500 [exp]	12.80	0.8328	GAS41.1
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G011345 [exp]	18.00	0.7681
AT1G60460			unknown protein		Potri.010G041900 [exp]	24.97	0.8312
AT5G07900			Mitochondrial transcription te...		Potri.001G035300 [exp]	29.69	0.7505
AT1G21280			unknown protein		Potri.004G133001 [exp]	31.55	0.8251
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.012G005500 [exp]	31.62	0.7359

Compare expression of checked genes

Potri.012G010001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.