Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 379 / 6e-115 AtRLP6 receptor like protein 6 (.1) AT5G27060 369 / 8e-112 AtRLP53 receptor like protein 53 (.1) AT3G11010 362 / 8e-110 AtRLP34 receptor like protein 34 (.1) AT1G47890 362 / 1e-108 AtRLP7 receptor like protein 7 (.1) AT3G05660 352 / 5e-106 AtRLP33 receptor like protein 33 (.1) AT2G15080 338 / 4e-100 AtRLP19 receptor like protein 19 (.1.2) AT4G13920 317 / 2e-93 AtRLP50 receptor like protein 50 (.1) AT2G33020 298 / 1e-86 AtRLP24 receptor like protein 24 (.1) AT3G28890 290 / 4e-85 AtRLP43 receptor like protein 43 (.1.2) AT1G71400 293 / 6e-85 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005600 [exp] 1464 / 0 AT1G45616 379 / 3e-115 receptor like protein 6 (.1) Potri.012G009900 [exp] 1406 / 0 AT1G45616 358 / 2e-107 receptor like protein 6 (.1) Potri.012G010300 [exp] 1377 / 0 AT3G11080 385 / 3e-118 receptor like protein 35 (.1) Potri.012G007901 [exp] 1301 / 0 AT3G25010 300 / 6e-88 receptor like protein 41 (.1) Potri.012G025400 [exp] 1177 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G028500 [exp] 1140 / 0 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.012G028600 [exp] 1119 / 0 AT1G47890 395 / 1e-120 receptor like protein 7 (.1) Potri.012G031251 [exp] 1116 / 0 AT1G45616 380 / 1e-115 receptor like protein 6 (.1) Potri.012G007932 [exp] 1115 / 0 AT1G45616 370 / 6e-112 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 357 / 1e-106 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 342 / 5e-101 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 327 / 3e-95 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10006825 [exp] 308 / 1e-88 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10003387 [exp] 294 / 7e-84 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10016341 [exp] 282 / 5e-80 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10014910 [exp] 279 / 1e-79 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10024721 [exp] 276 / 8e-79 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 276 / 1e-78 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10001035 [exp] 273 / 1e-76 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G010101.2 pacid=42783366 polypeptide=Potri.012G010101.2.p locus=Potri.012G010101 ID=Potri.012G010101.2.v4.1 annot-version=v4.1 ATGCAAATCTTTATTTCTCATCTTTCGTTCAACACTCCAAATATACTTTCGAATCCTGCAAGGCCAGCCAACATGGGGTTTTCACCACTGTCCCTCTCTC AATTTCTCTCTTCCATTCTGTTTCTCTTCCATTTTCACACAACAATTTCTTCATCAAATTACTCCTCTTCATCTCATTTCTGTGCTCCTGACCAAAGCCT TTCTTTGCTCCAATTCAAAGAGTCCTTTTCCATTAATAGCTCTGCTTCAGGGCGTTGCCAGCATCCCAAGACAGAGTCGTGGAAAGAGGGTACAGACTGC TGCTTGTGGGATGGGGTCACTTGTGACATGAAAACCGGGCAAGTCACTGCACTGGACCTTGCTTGCAGCATGCTTTATGGCACCCTCCATTCCAATAGCA CCCTCTTCTCCCTGCATCATCTTCAAAAGCTCGACCTCTCTGACAATGATTTCCAAAGCTCCCATATTTCTTCTCAATTTGGCCAGTTCTCCAATCTGAC ATATCTTAACCTAAATTACTCAGTCTTTGCAGGTCAAGTTCCGTCGGAAATCTCTCATCTCTCCAAATTGGTTTCACTTGATCTCTCTGGAGATGAAAAC GACTATCTAAGTCTGGAACCAATTTCTTTTGACAAGTTTGTTCGAAATCTAACCCAGCTTAGAGAACTCGATCTGAGTCGGGTAAACATGTCATTAGTTG TACCCAATTCCTTGATGAATCTGTCTTCTTCTTTGTCATCACTCAAACTCTTTTCCTGTGGACTGCAAGGAAAATTCCCATCCTCAATAAGAAAATTTAA GCACCTCCAGCAGTTGGATCTTGCAGATAACAATCTTACAGGTCCAATTCCATATGATTTTGAGCAACTCACTGAGTTGGTTTCACTTGCTCTCTCTGGA AACGAAAACGACTATCTAAGTCTAGAACCAATTTCTTTTGACAAGCTTGTTCAAAACCTAACCCACCTTAGAGAACTCTATCTGAGTTGGGTGAACATGT CATTGGTTGCACCCAATTCCTTGATGAATCTGTCTTCTTCTTTGTCATCACTCAAACTCTTTTCCTGTGGACTGCAAGGAAAATTCCCATCCTCAATGAG AAAATTTAAGCACCTCCAGCTGTTGGATCTTAGAAAAAACAATCTTACAGGTTCAATTCCAGATGATTTTGACCAACTCACTGAGTTGGTTTCAATTGAT CTCTCTTTCAATGATTATTTGAGTGTAGAACCAAGTTCTTTTGACAAGACTATTCAAAACCTAACCAAGCTAAGAGGTCTCCGTTTGGGTTATGTAAATA TGCCTTTGGTCACACCTAATTCCTTGGCGAATCTGTCCTCATCCTTGTCAGCTCTTGCCCTTTGGGGTTGTGGATTGAAAGGGAAGTTCCCAGGTAACAT CTTTCTACTACCAAACCTTGAATCACTTGATTTGACATTCAACGGCGACCTCACTGGCTCTTTTCCTTCGTCCAATGTGAGTAATGCCCTCTGGTTATTG GGTCTTTCTCATACGAGAATTTCAGTTTATTTAGAAAATGACTTCTTCACTAATCTAAAGTTGTTGGAAGTTCTGTCTCTTAGAAGCTCTAATATCATAA GATCAAATCTAACCCTGATTGGTCATCTCACTCAACTCACCCGTTTAGATCTCGCAGATAATAATTTTGGCGGTCAGATTCCATCATCAGTTGAAAACCT TGTGCAACTTCGTATTTTGTATCTCGATTCCAATAATTTTTTGGGTCAGATTCCAGATTTTTTAGGTAACCTAACCCTCCTTGAAAATTTAGGTTTATCT AATAATCAACTCTCAGGACCTATTTCTTCTCAAATAAATACCCTTTCATTGAGATTCTTTGATTTGAGCAAAAACAACTTGCATGGTCCAATCCCAAGTT CAATTTTCAAACAAGAGAACTTGGAAGCCCTTGTTCTTGCATCCAACAGTAAATTAACAGGTGAAATTTCTTCTTCTATTTGCAAGCTTAAATTCCTTCG ACTCCTTGATTTGTCCAACAACAGCTTGAGTGGTTTTATACCACAATGTTTAGGGAACTTTAGCAACTCTCTCTCAATTTTGAATCTTGGCATGAATAAT CTTCAAGGCACTATTTTTTCACCATTTTCAAAGGGGAATAACTTGGGATATCTCAACCTAAATGGCAATGAATTGGAAGGGAAAATACCATCGTCTATCA TCAACTGCACAATGCTGGAAGCTCTTGATCTTGGCAACAATAAGATTGAGGACACATTTCCCTATTTTCTAGAAACACTTCCAGAGCTTTATGTTCTTGT ACTAAAGTCCAACAAACTCCAAGGTTTTGTGAATAGTTCGACTACTAATAATTCATTCTCCAAATTGCGGATTTTGGACATCTCCAACAATAGTTTGAGT GGACCTTTGCCAATAGGGTATTTCAATAATCTCGAAGCAAAAATGACCTATAATCCTAATATATATTACATGATGGCAGTGACATGGGAAGGGTTTGAAA CTGAGTTCACGAAAATCCAAAGCACTCGTAGAATACTTGATTTGTCAAATAACAAATTCACCGGAGAGATTCCAGAGTTGATCGGAAAACTTAAAGCAGT CCAACAACTTAACTTCTCTCATAATTCCCTTACAGGTCATATTCAATCATCTATTGGAATGTTGACCTATCTGGAATCATTAGATCTGTCTTCAAATTTG TTTACTGGAAGGATTCCAGTACAGTTGGCAGATCTAACATTTCTTGGAGTCTTAAACCTTTCACATAACCAGCTTGAGGGGCCCATACCCAGTGGAAAGC ACTTCAACACGTTTAATGCAAGCTCATTTGAAGGAAACTTGGGTTTATGTGGATTTCCAATGCCAAAAGAATGCAATAGTGACGAGGCACCACCATCGCA GCCATCAAACTTTCACGATGGAGATGATTCAAAATTCTTTGGAGAAGGATTTGGATGGAAAGCTGTGGCCATAGGGTATGGATGTGGGTTTGTGTTTGGA GTCACAATGGGATACGTTGTGTTTAGGACAAGAAAACCAGCATGGTTTCTGAAAGTGGTTGAAGATCATTGGAATCTGAAGGCAAGAAGAACGAAGAAGA ATGCTCGTAGAAATGGTGCAAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.012G010101.2 pacid=42783366 polypeptide=Potri.012G010101.2.p locus=Potri.012G010101 ID=Potri.012G010101.2.v4.1 annot-version=v4.1 MQIFISHLSFNTPNILSNPARPANMGFSPLSLSQFLSSILFLFHFHTTISSSNYSSSSHFCAPDQSLSLLQFKESFSINSSASGRCQHPKTESWKEGTDC CLWDGVTCDMKTGQVTALDLACSMLYGTLHSNSTLFSLHHLQKLDLSDNDFQSSHISSQFGQFSNLTYLNLNYSVFAGQVPSEISHLSKLVSLDLSGDEN DYLSLEPISFDKFVRNLTQLRELDLSRVNMSLVVPNSLMNLSSSLSSLKLFSCGLQGKFPSSIRKFKHLQQLDLADNNLTGPIPYDFEQLTELVSLALSG NENDYLSLEPISFDKLVQNLTHLRELYLSWVNMSLVAPNSLMNLSSSLSSLKLFSCGLQGKFPSSMRKFKHLQLLDLRKNNLTGSIPDDFDQLTELVSID LSFNDYLSVEPSSFDKTIQNLTKLRGLRLGYVNMPLVTPNSLANLSSSLSALALWGCGLKGKFPGNIFLLPNLESLDLTFNGDLTGSFPSSNVSNALWLL GLSHTRISVYLENDFFTNLKLLEVLSLRSSNIIRSNLTLIGHLTQLTRLDLADNNFGGQIPSSVENLVQLRILYLDSNNFLGQIPDFLGNLTLLENLGLS NNQLSGPISSQINTLSLRFFDLSKNNLHGPIPSSIFKQENLEALVLASNSKLTGEISSSICKLKFLRLLDLSNNSLSGFIPQCLGNFSNSLSILNLGMNN LQGTIFSPFSKGNNLGYLNLNGNELEGKIPSSIINCTMLEALDLGNNKIEDTFPYFLETLPELYVLVLKSNKLQGFVNSSTTNNSFSKLRILDISNNSLS GPLPIGYFNNLEAKMTYNPNIYYMMAVTWEGFETEFTKIQSTRRILDLSNNKFTGEIPELIGKLKAVQQLNFSHNSLTGHIQSSIGMLTYLESLDLSSNL FTGRIPVQLADLTFLGVLNLSHNQLEGPIPSGKHFNTFNASSFEGNLGLCGFPMPKECNSDEAPPSQPSNFHDGDDSKFFGEGFGWKAVAIGYGCGFVFG VTMGYVVFRTRKPAWFLKVVEDHWNLKARRTKKNARRNGARRN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G010101 [exp]	0	1
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G113100 [exp]	2.44	0.9465
AT5G36930			Disease resistance protein (TI...		Potri.019G019053 [exp]	4.00	0.9140
AT3G05650		AtRLP32	receptor like protein 32 (.1)		Potri.012G008911 [exp]	6.92	0.8750
AT1G15060			Uncharacterised conserved prot...		Potri.010G119700 [exp]	7.48	0.8760
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	10.81	0.8733
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G004900 [exp]	11.40	0.8840
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.002G116300 [exp]	12.96	0.8636
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G010850 [exp]	13.07	0.8522
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019500 [exp]	13.41	0.8404
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.019G013750 [exp]	14.49	0.8479

Compare expression of checked genes

Potri.012G010101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.