Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11080 385 / 2e-118 AtRLP35 receptor like protein 35 (.1) AT3G11010 370 / 7e-113 AtRLP34 receptor like protein 34 (.1) AT1G45616 366 / 2e-110 AtRLP6 receptor like protein 6 (.1) AT5G27060 362 / 2e-109 AtRLP53 receptor like protein 53 (.1) AT2G15080 361 / 7e-109 AtRLP19 receptor like protein 19 (.1.2) AT3G05660 356 / 5e-108 AtRLP33 receptor like protein 33 (.1) AT3G05650 345 / 7e-104 AtRLP32 receptor like protein 32 (.1) AT4G13920 330 / 4e-98 AtRLP50 receptor like protein 50 (.1) AT3G25010 320 / 1e-94 AtRLP41 receptor like protein 41 (.1) AT1G47890 320 / 1e-93 AtRLP7 receptor like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G009900 [exp] 1444 / 0 AT1G45616 358 / 2e-107 receptor like protein 6 (.1) Potri.012G005600 [exp] 1400 / 0 AT1G45616 379 / 3e-115 receptor like protein 6 (.1) Potri.012G010101 [exp] 1387 / 0 AT1G45616 379 / 6e-115 receptor like protein 6 (.1) Potri.012G007901 [exp] 1353 / 0 AT3G25010 300 / 6e-88 receptor like protein 41 (.1) Potri.012G025400 [exp] 1147 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.012G028500 [exp] 1116 / 0 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.012G028600 [exp] 1112 / 0 AT1G47890 395 / 1e-120 receptor like protein 7 (.1) Potri.012G013435 [exp] 1105 / 0 AT3G11080 367 / 6e-112 receptor like protein 35 (.1) Potri.012G007932 [exp] 1104 / 0 AT1G45616 370 / 6e-112 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026415 [exp] 342 / 3e-101 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10014910 [exp] 333 / 2e-99 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10003389 [exp] 329 / 9e-97 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 318 / 2e-92 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10024721 [exp] 303 / 2e-88 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10006825 [exp] 303 / 2e-87 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10032335 [exp] 298 / 8e-87 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011039 [exp] 292 / 6e-82 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10016341 [exp] 274 / 3e-77 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 273 / 6e-77 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G010300.2 pacid=42784270 polypeptide=Potri.012G010300.2.p locus=Potri.012G010300 ID=Potri.012G010300.2.v4.1 annot-version=v4.1 ATGGGGTTTTCACCACTGTCCCTCTCTCAATTTCTCTCTTCCATTCTGTTTCTCTTCCATTTTCACACAACAATTTCTTCATCAAATTACTCTTCATCTC GTTTCTGTGCTCCTGACCAAAGCCTTTCTTTGCTCCAATTCAAAGAGTCCTTTTCCATTAATAGCTCTGCTTCTTCGGAGGATTGCCAGCATCCCAAGAC AGAGTCGTGGAAAGAGGGTACAGACTGCTGCTTGTGGGATGGGGTCACTTGTGACCTGAAAACCGGGCATGTCACTGCACTGGACCTCTCTTGCAGCATG CTTTATGGCACCCTCCATCCCAATAGCACCCTCTTCTCCCTGCATCATCTTCAAAAGCTCGACCTCTCTGACAATCATTTCAATAGCTCCCATATTTCTT CTCGATTTGGCCAGTTCTCCAACCTGACACATCTTAACCTAAATTACTCAGTCTTTGCAGGTCTAGAACCAATTTCTTTTGACAAGCTTGTTCGAAATCT AACCCAGCTTAGAGAACTCGATCTGAGTTCAGTAGACATGTCATTGGTTGCACCCAATTCCTTGATGAATCTGTCTTCTTCTTTGTCGTCACTCAAACTC CGTTCCTGTGGATTGCAAGGAAAATTCCCATCCTCAATGAGAAAGTTTAAGCACCTCCAGCAGTTGGATCTTGCAGATAACAATCTTACAGGTCCAATTC CATATGATCTTGAGCAACTCACTGAGTTGGTTTCACTTGCTCTCTCTGGAAACGAAAACGACTATCTAAGTCTAGAACCAATTTCTTTTGACAAGCTTGT TCAAAATCTAACCCAGCTTAGAGAACTCTATCTGAGTTGGGTGAACATGTCATTGGTTGTACCCAATTCCTTGATGAATGTGTCTTCTTCTTTGTCATCA CTCGCACTCTACTCCTGTGGATTGCAAGGAAAATTTCCATCCTCAATGAGACAATTTAAGCACCTCCAGCAATTGGATCTTAGATACAACAATTTTACAG GTTCAATTCCATATGATCTTGGGCAACTCACTGAGTTGGTTTCAATTGATCTCTCTTACAATGACTATTTGAGTGTAGAACCAAATTCTTTTGACAAGAT TATTCAAAACCTAACCAAGCTAAGAGGACTCCATTTGGGTTATGTAAATATGCCTTTGGTCATACCTAATTCCTTGGCGAATCTGTCCTCATCCTTGTCA GTTCTTGCCCTTTGGGGTTGTGGATTGAAAGGGAAGTTCCCAGGTAACATCTTTCTCCTACCAAACCTTAAATCACTTGATTTGACATACAACGACGAAC TCACTGGCTCTTTTCCTTCATCCAATGTGAGTAATGTCCTCCGGTTATTGGGTCTTACTCATACGAGAATTTCAGTTTCTTTAGAAAATGACTTCTTCAT AAATCTAAAGTTGTTGGAAGTTCTGGTTCTCAGAGAATGTAATATCATAAAGTCAAATTTAACCCTGATTGGTCATCTCACACAGCTCACTCGTTTAGAC CTCGCAGGTAACCATTTCAGCGGTCAGATTCCACCATCACTTAGAAACCTTGTGCACCTTCAGTCCTTATATCTCGATAACTGTAATTTTTCAGGTAGGA TTCCAGATTTTTTAGGTAACCTGACCCTCCTTGAAAATTTAGGTTTATCTAGCAATCAACTTGTAGGACCTATCCCTTCTCAAATAAGTACTCGTTCATT GAAATTGTTTAATTTGGGAAACAACCACTTGCACGGTCCAATCCCAAGTTCAATTTTCAAACAAGAGAACCTGGAAGCCCTTGCTCTTGCATCCAACAAT AAATTAACAGGTGAAATTTCTTCTTCTATTTGCAAGCTTAAATTCCTTCGACTCCTTGATTTGTCCAACAACAATTTGAGTGGTTTTATACCACAATGTT TAGGGAACTTTAGCAACTCTCTCTTAATTTTGAATCTTGGCATGAATAATCTTCAAGGCACTATCTTTTCACCATTTTCAAAAGGGAATAACTTGGGATA TCTCAACCTAAATGGCAATGAATTGGAAGGGAAAATACCATTGTCTATCATCAACTGTACAATGCTGGAAATTCTTGATCTTGGCAACAATAAGATTGAG GATACATTCCCCTATTTCCTTGAAATGCTTCCAGAGCTGCATGTTCTTGTCCTAAAGTCCAATAAGCTCCAGGGTTTTGTGAATGGTCCGATTGCTAATA ATTCCTTCTCCAAATTACGGATTTTCGATATCTCCAGCAATAATTTGAGTGGATCATTGCCAACAGGGTATTTCAATAGTCTTGAAGCAATGATGATCTC TGATCAAAATTCATTTTACATGATGGCAAGAAATTACTCTGACTATGCCTATTCCATAAAAGTGACATGGAAAGGGTTTGATATTGAGTTCGCGAGAATC CAAAGCGCTCTTAGAATACTCGATTTTTCAAACAACAATTTCATCGGAGAGATTTCAAAGGTGATCGGAAAGCTTAAAGCACTTCAACAACTCAACCTCT CTCATAATTCCCTTACAGGCCATATTCAATCATCATTAGGAATGTTGACCTATCTGGAATCATTAGATCTGTCTTCGAATTTGCTTACTGGAAGGATTCC AGTACAGTTGGCAGATCTAACATTTCTTGGAGTCTTAAACCTTTCACATAACCATCTTGAGGGGCCCATGCCCATTGGAAAGCAGTTCAACACGTTTAAT GCAAGCTCATTTGAAGGAAACTTGGGTTTATGTGGATTTCCAATGCCAAAAGAATGCAATAGTGACGAGGCACCACCATCGCAGCCGTCAAACTTTCACG ATGGAGATGATTCAAAATTCTTTGGAGAAGGATTTGGATGGAAAGCTGTGGCAATAGGGTATGGATGTGGGTTTGTGTTTGGAGTCACAATGGGATACGT TGTGTTTAGGACAAGAAAACCAGCATGGTTTCTGAAAGTGGTTGAAGATCAATGGAATCTGAAGGCAAGAAGAACGAAGAAGAATGCTCGTAGAAATGGT GCAAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.012G010300.2 pacid=42784270 polypeptide=Potri.012G010300.2.p locus=Potri.012G010300 ID=Potri.012G010300.2.v4.1 annot-version=v4.1 MGFSPLSLSQFLSSILFLFHFHTTISSSNYSSSRFCAPDQSLSLLQFKESFSINSSASSEDCQHPKTESWKEGTDCCLWDGVTCDLKTGHVTALDLSCSM LYGTLHPNSTLFSLHHLQKLDLSDNHFNSSHISSRFGQFSNLTHLNLNYSVFAGLEPISFDKLVRNLTQLRELDLSSVDMSLVAPNSLMNLSSSLSSLKL RSCGLQGKFPSSMRKFKHLQQLDLADNNLTGPIPYDLEQLTELVSLALSGNENDYLSLEPISFDKLVQNLTQLRELYLSWVNMSLVVPNSLMNVSSSLSS LALYSCGLQGKFPSSMRQFKHLQQLDLRYNNFTGSIPYDLGQLTELVSIDLSYNDYLSVEPNSFDKIIQNLTKLRGLHLGYVNMPLVIPNSLANLSSSLS VLALWGCGLKGKFPGNIFLLPNLKSLDLTYNDELTGSFPSSNVSNVLRLLGLTHTRISVSLENDFFINLKLLEVLVLRECNIIKSNLTLIGHLTQLTRLD LAGNHFSGQIPPSLRNLVHLQSLYLDNCNFSGRIPDFLGNLTLLENLGLSSNQLVGPIPSQISTRSLKLFNLGNNHLHGPIPSSIFKQENLEALALASNN KLTGEISSSICKLKFLRLLDLSNNNLSGFIPQCLGNFSNSLLILNLGMNNLQGTIFSPFSKGNNLGYLNLNGNELEGKIPLSIINCTMLEILDLGNNKIE DTFPYFLEMLPELHVLVLKSNKLQGFVNGPIANNSFSKLRIFDISSNNLSGSLPTGYFNSLEAMMISDQNSFYMMARNYSDYAYSIKVTWKGFDIEFARI QSALRILDFSNNNFIGEISKVIGKLKALQQLNLSHNSLTGHIQSSLGMLTYLESLDLSSNLLTGRIPVQLADLTFLGVLNLSHNHLEGPMPIGKQFNTFN ASSFEGNLGLCGFPMPKECNSDEAPPSQPSNFHDGDDSKFFGEGFGWKAVAIGYGCGFVFGVTMGYVVFRTRKPAWFLKVVEDQWNLKARRTKKNARRNG ARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G010300 [exp]	0	1
AT3G25010		AtRLP41	receptor like protein 41 (.1)		Potri.012G007901 [exp]	1.41	0.8650
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.002G234201 [exp]	3.46	0.8353
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009900 [exp]	10.19	0.8298
AT5G27550			P-loop containing nucleoside t...		Potri.005G030484 [exp]	21.81	0.7832
AT3G42170			BED zinc finger ;hAT family di...		Potri.016G027201 [exp]	28.98	0.7298
AT5G13090			unknown protein		Potri.012G101200 [exp]	29.89	0.7842
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134100 [exp]	39.42	0.7576
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088600 [exp]	44.45	0.7253
AT1G21920			Histone H3 K4-specific methylt...		Potri.005G175800 [exp]	45.95	0.6913
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G021330 [exp]	63.27	0.7448

Compare expression of checked genes

Potri.012G010300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.