Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28890 359 / 7e-111 AtRLP43 receptor like protein 43 (.1.2) AT3G11080 359 / 2e-108 AtRLP35 receptor like protein 35 (.1) AT3G11010 346 / 7e-104 AtRLP34 receptor like protein 34 (.1) AT5G25910 340 / 1e-102 AtRLP52 receptor like protein 52 (.1) AT2G15080 342 / 1e-101 AtRLP19 receptor like protein 19 (.1.2) AT1G71400 337 / 3e-101 AtRLP12 receptor like protein 12 (.1) AT5G27060 339 / 5e-101 AtRLP53 receptor like protein 53 (.1) AT2G33060 324 / 1e-96 AtRLP27 receptor like protein 27 (.1) AT3G05660 324 / 3e-96 AtRLP33 receptor like protein 33 (.1) AT1G47890 325 / 2e-95 AtRLP7 receptor like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G028101 [exp] 1474 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G027600 [exp] 1469 / 0 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.012G014625 [exp] 1387 / 0 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G027400 [exp] 1346 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G008911 [exp] 1298 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1) Potri.011G054500 [exp] 1289 / 0 AT5G27060 352 / 6e-106 receptor like protein 53 (.1) Potri.012G026900 [exp] 1285 / 0 AT3G25010 315 / 2e-93 receptor like protein 41 (.1) Potri.012G025100 [exp] 1266 / 0 AT3G11080 343 / 4e-103 receptor like protein 35 (.1) Potri.011G055000 [exp] 1251 / 0 AT1G45616 456 / 3e-145 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026415 [exp] 402 / 6e-123 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003389 [exp] 399 / 4e-122 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 399 / 1e-121 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003387 [exp] 353 / 3e-105 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10032335 [exp] 321 / 6e-95 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011039 [exp] 331 / 8e-95 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10006825 [exp] 321 / 2e-93 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10024721 [exp] 317 / 2e-93 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011064 [exp] 314 / 2e-91 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10014910 [exp] 300 / 2e-87 AT1G71400 357 / 7e-110 receptor like protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G010445.1 pacid=42783267 polypeptide=Potri.012G010445.1.p locus=Potri.012G010445 ID=Potri.012G010445.1.v4.1 annot-version=v4.1 ATGGGGTTTTCACCACTGTCCCTCTCCCAATCTCTCTCTTTCATTCTGTTTCTCTTCCATTTCCATTCAACAATTTCTTCTTCTCATTTCTGTGCTCTTC ACCAAAGTTTTTCTTTGCTCCAATTCAAAGAATCCTTTTCCATTAATAGCTCTGCTTCAGTGCTTTGCCAGCATCCAAAGACAGAGTCATGGAAAGAGGG TACAGACTGCTGCTTGTGGAATGGGGTCACTTGTGACCTGAATACCGGGCATGTCACTGCACTGGACCTCTCTTGCAGCATGCTTTACGGCACCCTCCAT TCCAATAGCACCCTCTTCTCCCTGCATGATCTTCAAAAGCTCGACCTCTCTGACAATCATTTCAATAGCTCCCATATTTCTTCTCGATTTGGCCAGTTCT CCAATCTGACACTTCTTAACCTAAATTACTCAGTCTTTGCAGGTCAAGTTCCGTCGGAAATCTCTCTTCTCTCTAAATTGGTTTCACTTGATCTCTCTAG AAACTTCTACGATCTAAGTCTAGAACCAATTTCTTTTGACAAGCTTGTTCGAAACCTAACCAAACTTAGAGAACTTGATTTGAGTTCAGTAGACATGTCA CTGCTTGTTCCCGATTCCTTGATGAATCTGTCTTCTTCTCTGTCATCACTCAAACTCAATGACTGTGGATTGCAACGGAAACTCCCATCCTCAATGGGGA AATTTAAGCACCTGCAGTACTTGGATCTTGGAGGGAACAATCTTACTGGTCCAATTCCATATGATTTTGATCAACTCACTGAGTTGGTTTCACTTTATCT CTCTGAAAACTTCTATCTAAGTCCAGAACCAATTTCTTTTCACAAGATTGTTCAAAACCTAACCAAGCTAAGAGATCTCGATCTGACTTCTGTAAATATG TCTTTGGTTGCACCTAATTCCTTGACGAATCTGTCCTCTTCTTTGTCATCTCTTTCCCTCAGTGGTTGTGGATTGCAGGGGAAGTTCCCGGGTAACAACT TTCTCCTCCCAAACCTTGAATCACTGGATCTGTCATACAACGAAGGCCTCACTGGCTCTTTTCCTTCGTCCAATTTGAGTAATGTCCTCTCTCAGTTGCG TCTTTCTAATACAAGAATTTCAGTTTATTTAGAAAACGACTTAATCAGTAATCTAAAGTCATTAGAATATATGTCTCTTCGTAATTGTAACATTATAAGG TCAGATCTACCCCTGCTCGGTAATCTCACTCAGCTCATCATTTTAGACCTTTCAAGTAACAATTTTAGTGGTCAGATCCCACCATCACTTAGTAATCTCA CACAGCTCATATATTTAGTCCTCTCAAGTAACAATTTTAGCGGTCAGATCCCACAATCACTTCGTAATCTCACACAGCTCACATTTTTAGACCTCTCAAG TAACAATTTTAACGGTCAGATCCCATCATCACTTGGAAACCTTGTACAGCTTCGTTCCTTGTATCTCAGTTCCAATAAATTGATGGGTCAAGTTCCAGAT TCTTTAGGTAGCCTAGTCAATCTTTCAGATTTAGATTTATCAAATAATCAACTAGTAGGCGCTATCCATTCTCAATTAAATACTCTTTCAAATCTACAAT ATCTATTTTTATATGGTAACTTGTTCAATGGAACAATACCATCCTTTTTGTTTGCTCTTCCTTCTTTATATTATCTTTACCTTCATAACAATAATTTCAT AGGCAATATAAGTGAACTCCAATACTATTCATTGAGAATCCTTGATTTGAGCAATAACTACTTACACGGTACAATCCCAAGTTCGATTTTCAAACAAGAG AACTTGCAAGTCCTTATTCTTGCGTCCAATAGTAAATTGACAGGTGAGATTTCTTCTTCTATTTGCAAGCTGAGATTCCTTCGGGTCCTGGACTTGTCCA CCAACAGCTTGAGTGGTTCTATGCCACAATGTTTGGGGAACTTCAGCAGCATGCTCTCAGTATTGCATCTAGGCATGAACAATCTTCAAGGCACCATCCC TTCAACATTTTCAAAGGATAATAGCTTGGAATATCTCAGCCTCAATGGAAATGAAATAGAAGGGAAAATATCATCGTCTATCATCAACTGCACAATGTTG CAAGTTCTTGATCTTGGCAACAATAAGATTGAGGATACATTTCCTTACTTTCTAGAAACGCTTCCAAAGCTCCAAATTCTTGTCCTAAAATCCAATAAAC TCCAAGGTTTTGGGAAGGGTCCGACTGCATATAATTCCTTCTCTAAATTACGGATTCTTGACATCTCTGACAACAATTTTAGTGGGCCATTGCCAACTGG GTATTTCAATAGTCTTGAAGCAATGATGGCCTCGGATCAAATCATGATTTACATGACAACAAATTACACTGGCTATGTCTATTCCATAGAAATGACATGG AAAGGTGTAGAAATTGAGTTTACGAAGATCCGAAGTACTATCAGAGTACTTGATTTGTCAAATAACAATTTCACCGGAGAGATTCCAAAAATGATCGGAA AGCTTAAAGCACTCCAACAGCTCAACCTCTCTCATAATTCCCTTACAGGTCAAATCCAATCATCATTAGGAAATTTGACCAATTTGGAATCATTAGATCT ATCTTCAAATTTGCTTACCGGAAGGATTCCAACGCAGCTGGGGGGTCTAACATTTCTTGCAATCCTAAACCTTTCACATAACCAGCTAGAGGGGCGTATA CCAAGTGGAGAGCAGTTCAACACCTTTACTGCAACCTCATTTGAAGGAAACTTGGGTTTATGTGGATTTCAAGTACTAAAAGAATGCTACGGTGATGAGG CACCATCATTGCCGCCATCAAGCTTTGATGAAGGAGATGATTCAACACTGTTTGGAGAAGGATTTGGATGGAAATCTGTGACAATGGGGTATGGATGCGG GTTTGTGTTTGGAGTTGCAACGGGATACATCGTGTTTAGAACAAGAAAACCTTCATGGTTTTTTAGGATGGTTGAAGATATATGGAATCTCAAGAGCAAG AAAACAAAGAAGAATGTTGGCAGATGTGGTGCTGGAAGAAACTAG
AA sequence Show only first row Show all	>Potri.012G010445.1 pacid=42783267 polypeptide=Potri.012G010445.1.p locus=Potri.012G010445 ID=Potri.012G010445.1.v4.1 annot-version=v4.1 MGFSPLSLSQSLSFILFLFHFHSTISSSHFCALHQSFSLLQFKESFSINSSASVLCQHPKTESWKEGTDCCLWNGVTCDLNTGHVTALDLSCSMLYGTLH SNSTLFSLHDLQKLDLSDNHFNSSHISSRFGQFSNLTLLNLNYSVFAGQVPSEISLLSKLVSLDLSRNFYDLSLEPISFDKLVRNLTKLRELDLSSVDMS LLVPDSLMNLSSSLSSLKLNDCGLQRKLPSSMGKFKHLQYLDLGGNNLTGPIPYDFDQLTELVSLYLSENFYLSPEPISFHKIVQNLTKLRDLDLTSVNM SLVAPNSLTNLSSSLSSLSLSGCGLQGKFPGNNFLLPNLESLDLSYNEGLTGSFPSSNLSNVLSQLRLSNTRISVYLENDLISNLKSLEYMSLRNCNIIR SDLPLLGNLTQLIILDLSSNNFSGQIPPSLSNLTQLIYLVLSSNNFSGQIPQSLRNLTQLTFLDLSSNNFNGQIPSSLGNLVQLRSLYLSSNKLMGQVPD SLGSLVNLSDLDLSNNQLVGAIHSQLNTLSNLQYLFLYGNLFNGTIPSFLFALPSLYYLYLHNNNFIGNISELQYYSLRILDLSNNYLHGTIPSSIFKQE NLQVLILASNSKLTGEISSSICKLRFLRVLDLSTNSLSGSMPQCLGNFSSMLSVLHLGMNNLQGTIPSTFSKDNSLEYLSLNGNEIEGKISSSIINCTML QVLDLGNNKIEDTFPYFLETLPKLQILVLKSNKLQGFGKGPTAYNSFSKLRILDISDNNFSGPLPTGYFNSLEAMMASDQIMIYMTTNYTGYVYSIEMTW KGVEIEFTKIRSTIRVLDLSNNNFTGEIPKMIGKLKALQQLNLSHNSLTGQIQSSLGNLTNLESLDLSSNLLTGRIPTQLGGLTFLAILNLSHNQLEGRI PSGEQFNTFTATSFEGNLGLCGFQVLKECYGDEAPSLPPSSFDEGDDSTLFGEGFGWKSVTMGYGCGFVFGVATGYIVFRTRKPSWFFRMVEDIWNLKSK KTKKNVGRCGAGRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.012G010445 [exp]	0	1
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Potri.015G069600 [exp]	1.41	0.9474	EDS1.2
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119132 [exp]	2.44	0.9246
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.009G141600 [exp]	4.89	0.9165
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147400 [exp]	6.48	0.9143
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119066 [exp]	6.92	0.9142
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G027600 [exp]	7.41	0.8669
AT4G21700			Protein of unknown function (D...		Potri.003G087400 [exp]	8.24	0.9022
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013400 [exp]	11.74	0.8913
AT3G18670			Ankyrin repeat family protein ...		Potri.015G125000 [exp]	12.48	0.9092
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.013G106200 [exp]	12.48	0.9085

Compare expression of checked genes

Potri.012G010445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.