Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18010 423 / 2e-146 Major facilitator superfamily protein (.1) AT1G18000 423 / 2e-146 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005100 [exp] 596 / 0 AT1G18010 630 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019528 [exp] 458 / 8e-160 AT1G18010 659 / 0.0 Major facilitator superfamily protein (.1) Lus10043371 [exp] 452 / 1e-157 AT1G18010 657 / 0.0 Major facilitator superfamily protein (.1) Lus10006288 [exp] 436 / 7e-151 AT1G18010 649 / 0.0 Major facilitator superfamily protein (.1) Lus10019527 [exp] 377 / 2e-128 AT1G18010 578 / 0.0 Major facilitator superfamily protein (.1) Lus10020560 [exp] 377 / 3e-128 AT1G18010 573 / 0.0 Major facilitator superfamily protein (.1) Lus10009416 [exp] 298 / 5e-99 AT1G18010 405 / 1e-140 Major facilitator superfamily protein (.1) Lus10009413 [exp] 114 / 1e-29 AT1G18010 152 / 2e-47 Major facilitator superfamily protein (.1) Lus10043370 [exp] 82 / 3e-18 AT1G18010 103 / 3e-26 Major facilitator superfamily protein (.1) Lus10009415 [exp] 71 / 1e-14 AT1G18010 108 / 1e-28 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G011000.2 pacid=42782515 polypeptide=Potri.012G011000.2.p locus=Potri.012G011000 ID=Potri.012G011000.2.v4.1 annot-version=v4.1 ATGGGTTTCGAAGGAGATGACACCCAAGTGTCAACCAAAGCAAGATTCAGGTACAACTCACCATTGGTCCAAGTCACACTCATAGGACTTGTCTGTTTCT GTTGTCCTGGTATGTTCAACGCCCTCGCTGGTTTGGGAGGTGGTGGCCAGGAGAATCCCACTGCTGCCAACAATGCCAACACCGCCCTTTACACCACCTT TGCCATCTTTGGCATTCTCGGTGGTGGAATTTACAACATTCTTGGTCCTCGCTTGACCTTAGCTTCTGGCTGCAGCACTTACGTGTTGTATGCAGGTTCT TTTCTTTATTATAATCACCAACAGCACCAAGCTTTTGCTATTATTTCCGGTGCCGTTCTTGGCATTGGTGTTATTGGTGGGCTGATTCCTTTCATTCTTA ACTACAATCGGAGTGAGGCTGCTTCTGTTAATGATGGGACTAACATTGGAATCATGTGTTTTATGACTGCGGGGACTCTGCTTTCCTTGTCCCTCTTGCC GCCGAGCAAAGTAGTTCGCGATGATGGCACACGCTGCACAAACATTAAGTACTCTAAAGTTTCTACTGAGGCTGTGGAGATTGGTAAGTTGTTCTTCAAT TGGAAGATGCTTTTTATTGCTCCTGCTGCTTGGGCTAGCAACTTTGTACACAGTTACCAGTTCAATATGGGATTGAACAATGTGTTCTATTGGGGGGGCC AGATGGTGGGTTCTGTTGGGATTGGATACATATTGGATTTCAGCTTCCAGAGTAGGAGGAAGAGGGGCTTTGTTGGTAATGGAATTGTCGCTGCGCTTGG GACTGCTATCTGGGCAGGTGGACTTGCGAAGCAGGTAGGATATAGCCGCAATGATCTACCACCCAAGTTGGATTTCAAGGACTCAGGTTCCGATTTCGCA GGACCTTTCATTTTGTATTTCAGTTATGGGCTGCCGGATGCCATGTTCCGAAGCACGGTCTACTGGGTGATTGGGGCCTTGGCTGATGACTCTGAGGTTC TTAGCAGAGTGCAGAGTGCAGGAGCCGCAGTTGCTTGGCATGTGGATGCACGCAAAGTTCCATTACTTACCCAGTTGATTGTGAATTGGTCCTTCACAAC AGTGAGTTATCCATTGCTTGCAATCCTAGCCATGCTTGTGATCAAGGACGACCACAAGGGTGAGGAGTCATCAATCAACCCTGCATCTATGGATAACAAT AGCAAGCCAGTATAA
AA sequence Show only first row Show all	>Potri.012G011000.2 pacid=42782515 polypeptide=Potri.012G011000.2.p locus=Potri.012G011000 ID=Potri.012G011000.2.v4.1 annot-version=v4.1 MGFEGDDTQVSTKARFRYNSPLVQVTLIGLVCFCCPGMFNALAGLGGGGQENPTAANNANTALYTTFAIFGILGGGIYNILGPRLTLASGCSTYVLYAGS FLYYNHQQHQAFAIISGAVLGIGVIGGLIPFILNYNRSEAASVNDGTNIGIMCFMTAGTLLSLSLLPPSKVVRDDGTRCTNIKYSKVSTEAVEIGKLFFN WKMLFIAPAAWASNFVHSYQFNMGLNNVFYWGGQMVGSVGIGYILDFSFQSRRKRGFVGNGIVAALGTAIWAGGLAKQVGYSRNDLPPKLDFKDSGSDFA GPFILYFSYGLPDAMFRSTVYWVIGALADDSEVLSRVQSAGAAVAWHVDARKVPLLTQLIVNWSFTTVSYPLLAILAMLVIKDDHKGEESSINPASMDNN SKPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18010			Major facilitator superfamily ...		Potri.012G011000 [exp]	0	1
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.005G182700 [exp]	3.87	0.8795	ACO4
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.003G124300 [exp]	4.24	0.8678
AT1G57680			unknown protein		Potri.012G023500 [exp]	4.89	0.8468
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.004G181800 [exp]	5.29	0.8791
AT2G35910			RING/U-box superfamily protein...		Potri.006G201500 [exp]	6.32	0.8532
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Potri.003G176300 [exp]	6.92	0.8603
					Potri.017G041400 [exp]	8.83	0.8162
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G013300 [exp]	9.59	0.8803
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.004G090900 [exp]	10.95	0.8034
AT3G49710			Pentatricopeptide repeat (PPR)...		Potri.014G012500 [exp]	11.57	0.7587

Compare expression of checked genes

Potri.012G011000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.