Plant FIBer expression Database

Potri.012G011490 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G011490.1 pacid=42783542 polypeptide=Potri.012G011490.1.p locus=Potri.012G011490 ID=Potri.012G011490.1.v4.1 annot-version=v4.1
ATGAAATCTACGGCAGTTTGGAAAAAAACCAACTCTCTGGCAGGAGGGAGAAGAAAGAAGCGTGGAAAACAGGATCGTTCTCAGGTATCATTAGGAATTG
TTTCTAGGAGGAAGAAGTATAAGGTTAGGTTTCTTAATGCCAGAGGCAGTTTGACAGAGATGGATAAGGAGGTTAGTGACAACTCTATGGACTCAACTAT
TGCCAAAGTCAATGGAAGGTTGGAAAAACTGGCAGCTGATACTGAACCCACCATAGTCTATAGCTCTGAACGTGAGGTGGCAGCTACACATCACCTTGGC
AAGGTTTTAGGGATTCATAGAGATACTAATGATGGTTTGGATGCTGAACATATTCGGAGGCAGATTGATATGAAATATATAGAAGGAATGGTTGGACTCC
CTCTGAGTTCTTGCTCTGGTGCCCAGGTTATGAGTTTTGTTCTAATCTTAAGCAGATGCTACCATGGAATTATAGAGATTTAG
AA sequence
>Potri.012G011490.1 pacid=42783542 polypeptide=Potri.012G011490.1.p locus=Potri.012G011490 ID=Potri.012G011490.1.v4.1 annot-version=v4.1
MKSTAVWKKTNSLAGGRRKKRGKQDRSQVSLGIVSRRKKYKVRFLNARGSLTEMDKEVSDNSMDSTIAKVNGRLEKLAADTEPTIVYSSEREVAATHHLG
KVLGIHRDTNDGLDAEHIRRQIDMKYIEGMVGLPLSSCSGAQVMSFVLILSRCYHGIIEI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G011490
[exp]
0 1
AT5G13420 Aldolase-type TIM barrel famil... Potri.001G068200
[exp]
6.63 0.7580
AT3G51970 ATASAT1, ASAT1,... ARABIDOPSIS THALIANA STEROL O-... Potri.009G055100
[exp]
8.66 0.7631
AT3G13080 EST2, ATMRP3, A... MULTIDRUG RESISTANCE PROTEIN 3... Potri.018G149700
[exp]
10.58 0.7373
AT5G11650 alpha/beta-Hydrolases superfam... Potri.018G045800
[exp]
12.00 0.7258
Potri.001G248704
[exp]
14.07 0.7075
Potri.006G091150
[exp]
16.49 0.7190
AT4G14410 bHLH bHLH104 basic Helix-Loop-Helix 104, ba... Potri.008G165700
[exp]
32.48 0.6532
AT5G15860 ICME, ATPCME Isoprenylcysteine methylestera... Potri.017G110700
[exp]
56.32 0.7071
AT4G29330 DER1 DERLIN-1 (.1) Potri.004G233200
[exp]
64.89 0.6922
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Potri.001G167400
[exp]
70.48 0.6424

Potri.012G011490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.