Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53110 354 / 1e-120 RING/U-box superfamily protein (.1) AT2G46495 218 / 1e-67 RING/U-box superfamily protein (.1) AT2G25410 206 / 9e-63 RING/U-box superfamily protein (.1) AT2G46494 194 / 1e-58 RING/U-box superfamily protein (.1) AT1G28040 166 / 2e-48 RING/U-box superfamily protein (.1) AT5G36001 150 / 3e-42 RING/U-box superfamily protein (.1.2) AT5G07040 118 / 7e-32 RING/U-box superfamily protein (.1) AT2G25409 103 / 2e-26 unknown protein AT2G46493 93 / 2e-22 RING/U-box superfamily protein (.1) AT2G46160 89 / 2e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017800 [exp] 518 / 0 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 270 / 7e-88 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 261 / 3e-84 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.003G139900 [exp] 229 / 1e-71 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.001G091700 [exp] 222 / 3e-69 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.003G192700 [exp] 120 / 1e-32 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.015G018000 [exp] 124 / 4e-31 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.001G032300 [exp] 114 / 3e-30 AT5G07040 143 / 5e-44 RING/U-box superfamily protein (.1) Potri.015G018200 [exp] 118 / 7e-29 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019018 [exp] 321 / 1e-107 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10012628 [exp] 246 / 3e-78 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10032382 [exp] 210 / 5e-64 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10003401 [exp] 195 / 7e-60 AT5G53110 187 / 5e-57 RING/U-box superfamily protein (.1) Lus10003400 [exp] 135 / 2e-38 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10014923 [exp] 127 / 5e-32 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10005389 [exp] 112 / 8e-30 AT5G07040 154 / 9e-49 RING/U-box superfamily protein (.1) Lus10024124 [exp] 111 / 5e-29 AT5G07040 190 / 2e-62 RING/U-box superfamily protein (.1) Lus10010123 [exp] 98 / 6e-24 AT5G53110 114 / 1e-30 RING/U-box superfamily protein (.1) Lus10025553 [exp] 91 / 1e-19 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0229 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.012G011500.2 pacid=42782950 polypeptide=Potri.012G011500.2.p locus=Potri.012G011500 ID=Potri.012G011500.2.v4.1 annot-version=v4.1 ATGGCGTACACTAGCAAAGTCATCTCCTTCATCTCCCTCTCACTTTTCCTCTCCTATCTTAACTCTGCAACAAGCCAAAATCATTGCTTAAAGACTGCCT GTAGCCGCAACGAGCCGGTGATTCGATTTCCTTTACGGATTAAAAATCGCCAGTCGAGGTCATGTGGTTTTCCAGGTTTTGACATATCCTGTGGTAGCTC CAATGAGACCCTATTAGAGCTACCCTCATCAGGAAAATTTAGAGTTCAAGCTATAGACTATGCCGGACAAGAAATATTGATCAATGATGATCCGGAAAAC TGCCTTCCCGGTCGAATTCTCTCGCTTAATCTCTCTAACTCTCCTTTCTCTGGCCTTTACTATCAATCCTTCATGTTCTTTAATTGCTCATCTTCTGATT ACAGGAAATACGGGCTAAATCCAATAGCTTGTCTTAGTGGCTCTACGTACACAGTTTTTGCTACATCTTCTTTAAGAATTGTTGATTTTCTACAGACAAG GAATTCATCCTGTAATTTAATCAGGATGGTTCCTGTTCCAGTTATGCGGCCATTTTATCAAGGAATCTCGTCCTCGGACCTTAGCGAGGACCTGCTTCTC ACTTGGGATCAACCTGACTGCGGAAAGTGTGAGTCGCGTGGTGGACGGTGTGGCTTTAGGACCAATTCTAGTGAAACTGTTTGCTCAAACGTTCCACATC GAGGAGTTCCTAGGAAAGCTCTTTATGCCATCACGGTAGCAGCTGGAATACCAGGGGCATTAATTCTACTAGGTCTCCTGTGTTTCATCTGTGGTAGGGT AATGAAGTGTGCTAGAAGGAGCCCATTAGGAGGTCTACCAGAAATGAATTCCACGGTTAATCCAGAAACTAAGGTTATTATTGCTGGACTCGATGGACCA ACAATAGAGTCCTATCCCAGAATAGTCCTTGGTGAGAGCAGAAGGTTGCCCAAGCCTGATGACAACACTTGCTCAATATGCTTGTGTGAGTACAAGCCTA AGGAGACACTGAAGACCATTCCTGAATGCAAACACTGCTTCCATTCTGATTGCATTGATGAATGGCTTCTGTTGAATGCTACTTGCCCCATTTGCCGATA TTCTCCAGAAAGATTGACACCGGCGCCTGAATCTTGA
AA sequence Show only first row Show all	>Potri.012G011500.2 pacid=42782950 polypeptide=Potri.012G011500.2.p locus=Potri.012G011500 ID=Potri.012G011500.2.v4.1 annot-version=v4.1 MAYTSKVISFISLSLFLSYLNSATSQNHCLKTACSRNEPVIRFPLRIKNRQSRSCGFPGFDISCGSSNETLLELPSSGKFRVQAIDYAGQEILINDDPEN CLPGRILSLNLSNSPFSGLYYQSFMFFNCSSSDYRKYGLNPIACLSGSTYTVFATSSLRIVDFLQTRNSSCNLIRMVPVPVMRPFYQGISSSDLSEDLLL TWDQPDCGKCESRGGRCGFRTNSSETVCSNVPHRGVPRKALYAITVAAGIPGALILLGLLCFICGRVMKCARRSPLGGLPEMNSTVNPETKVIIAGLDGP TIESYPRIVLGESRRLPKPDDNTCSICLCEYKPKETLKTIPECKHCFHSDCIDEWLLLNATCPICRYSPERLTPAPES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53110			RING/U-box superfamily protein...		Potri.012G011500 [exp]	0	1
AT1G49780		PUB26	plant U-box 26 (.1)		Potri.004G140100 [exp]	5.29	0.7914
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.001G330501 [exp]	5.74	0.7848
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Potri.001G020900 [exp]	8.00	0.7543
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	10.58	0.7790	Pt-SWP.2
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G099100 [exp]	13.22	0.7586
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	14.07	0.7591
AT3G06920			Tetratricopeptide repeat (TPR)...		Potri.010G014100 [exp]	18.43	0.7705
AT5G58190		ECT10	evolutionarily conserved C-ter...		Potri.006G079900 [exp]	18.89	0.7285
AT1G33440			Major facilitator superfamily ...		Potri.019G067500 [exp]	20.12	0.7415
AT1G31840			Tetratricopeptide repeat (TPR)...		Potri.015G036400 [exp]	22.24	0.7539

Compare expression of checked genes

Potri.012G011500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.