Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GLT1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53460 3649 / 0 GLT1 NADH-dependent glutamate synthase 1 (.1.2.3) AT2G41220 1184 / 0 GLU2 glutamate synthase 2 (.1) AT5G04140 1179 / 0 GLS1, GLUS, GLU1, FD-GOGAT FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) AT4G32360 62 / 3e-09 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT1G62560 51 / 8e-06 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT5G61290 50 / 2e-05 Flavin-binding monooxygenase family protein (.1) AT5G14220 48 / 7e-05 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) AT1G62620 47 / 0.0001 Flavin-binding monooxygenase family protein (.1) AT1G63370 47 / 0.0001 Flavin-binding monooxygenase family protein (.1) AT5G07800 45 / 0.0005 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017500 [exp] 4088 / 0 AT5G53460 3665 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.006G038400 [exp] 1180 / 0 AT5G04140 2831 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Potri.016G036900 [exp] 1168 / 0 AT5G04140 2813 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Potri.015G017601 [exp] 139 / 9e-39 AT5G53460 119 / 3e-33 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.017G118801 [exp] 60 / 2e-08 AT4G32360 666 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.012G067500 [exp] 47 / 0.0002 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121100 [exp] 45 / 0.0007 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000390 [exp] 3743 / 0 AT5G53460 3795 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019020 [exp] 1283 / 0 AT5G53460 1280 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019021 [exp] 1224 / 0 AT5G53460 1273 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10010457 [exp] 1193 / 0 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10003820 [exp] 617 / 0 AT2G41220 1401 / 0.0 glutamate synthase 2 (.1) Lus10015217 [exp] 65 / 4e-10 AT4G32360 661 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10031463 [exp] 65 / 5e-10 AT4G32360 659 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10003474 [exp] 49 / 3e-05 AT5G07800 623 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10015731 [exp] 46 / 0.0004 AT5G07800 621 / 0.0 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01493 [poplar] [flax] GXGXG GXGXG motif CL0036 [poplar] [flax] TIM_barrel PF01645 [poplar] [flax] Glu_synthase Conserved region in glutamate synthase CL0036 [poplar] [flax] TIM_barrel PF04898 [poplar] [flax] Glu_syn_central Glutamate synthase central domain CL0063 [poplar] [flax] NADP_Rossmann PF07992 [poplar] [flax] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0344 [poplar] [flax] 4Fe-4S PF14691 [poplar] [flax] Fer4_20 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
Representative CDS sequence Show only first row Show all	>Potri.012G011700.2 pacid=42782578 polypeptide=Potri.012G011700.2.p locus=Potri.012G011700 ID=Potri.012G011700.2.v4.1 annot-version=v4.1 ATGTCGGCTGCTGCTTCGAGTTCGAGCGCTATCCTTCAACCAAAATCGGTGAAATCTTCAATTTCCTCGCTTAACAAATCATCATACTGTGTTTTTTCTC CTTCGCTTAATGTTGCCACGGCAGCATCTATTTCTCGACGGAGAGGGAGGGCAACTCGATGTGTTTCGGCGAGGAACTCGGCGGTAGTTGAGAGAAAATC GTTTTTAGGAAGTAAAGTGCGCGGCTCTCCATCGGAGAGGTTGCATTTTTGGCTGTCGGAAGGACCGGGCAGAGAGCCGAAACTACGAGTTGTGGTCCGC TCTGCATTGTCTGGTGTGCCGGAGAAGCCGCTTGGGCTTTATGACCCGTCGTTTGATAAGGATTCGTGCGGGGTTGGGTTTGTTGCTGAGTTGTCAGGGG AAAACAGTCGCAAAACGGTGAACGATGCTCTGGAGATGTCGGTGAGGATGGCACATAGAGGAGCTTGCGGATGCGAAACCAATACTGGTGATGGTGCTGG GATTCTTGTGGCTCTTCCTCATGACTACTACAAGGAGGTGGCTAAGGATATTGGGTTCGAACTGCCTCCTTCAGGGGAATATGCAGTGGGCATGTTCTTT CTGCCCACATCTGATAATCGCAGGGAAGAAAGCAAGAATGTATTCACCAAGGTTGCGGAGTCTCTTGGGCATACAGTACTTGGATGGCGACCAGTGCCAA CAGATAATTCTGCATTGGGAAATGCTGCTTTGCAGACCGAACCTGTCATCGAGCAAGTGTTTCTTACAGCCACTCCTAGGTCGAAGGCTGATTTTGAGAA GCAGATGTACATATTGAGGAGGGTGTCGATGGTAGCTATTACAGCTGCACTAAACCTTCAATATGGTGGTGTTAAGGACTTTTATATCTGTTCCCTTTCC TCAAGGACGGTTGTTTATAAAGGTCAGTTGAAGCCTGACCAGTTGAAGGCTTACTATTATGCAGATCTTGGCAATGAAACGTTTACGAGCTACATGGCCA TGGTGCACTCACGATTTTCAACAAATACATTTCCTAGCTGGGATCGTGCTCAACCCATGCGTGTCTTGGGCCATAATGGGGAAATCAACACGCTCAGAGG CAATGTGAACTGGATGAAGGCTCGTGAGGGCCTTTTAAAGTGCAAGGAGCTCGGTCTCTCAAAGAATGAGATGAAGAAGATTCTTCCTATTGTAGATGCT AGTTCTTCTGATTCAGGGGCTTTTGATGGTGTGCTTGAGCTTCTAATTAGATCCGGGAGAACTCTCCCTGAGGCTGTCATGATGATGATTCCTGAAGCCT GGCAAAATGACAAGAACATGGATCCTCAAAGGAGGGCACTGTATGAATATTCCTCAGCCCTTATGGAACCATGGGACGGGCCTGCACTTATCTCATTTAC TGATGGCCACTACTTAGGAGCTACTCTGGACCGCAATGGGTTACGTCCAGGTAGATTTTACGTCACACGAAGTGGGCGAGTTATCATGGCCAGTGAAGTT GGTGTTGTGGATATTCCTCCTGAAGATGTCCTTAGGAAAGGACGGCTTAACCCTGGAATGATGCTTCTGGTGGATTTTGAGAAGCATACGGTAGTGGATG ATGAAGCCTTGAAGCAACAATATTCCTTAGCGAGGCCCTATGGGGAGTGGTTGAAGAGGCAAAAGATTGAACTCAGTGACATAGTTAACTCAGTTCAAGA ATCTGATAAAGTTGCTCCAGCCATTTCTGGGGTTGTCGCCGCATCTGATGATGATGACAGTATGGTGCATATGGGCATTCATGGATTGTTGGCACCATTA AAATCCTTTGGTTATACTGTTGAAGCCTTGGAGATGCTGATGCTTCCCATGGCAAAGGACGGTACTGAGCCTCTTGGTTCGATGGGAAATGACGCCCCCT TGGCTGTCATGTCTAACAGGGAAAAGCTCACTTTTGAGTACTTCAAGCAAATGTTCGCTCAAGTGACAAATCCCCCAATTGATCCTATCAGAGAGAAGAT TGTCACTTCCATGGAATGCATGATTGGGCCAGAAGGAGATCTGACAGAAACAACTGAAGAACAATGCCGCCGTCTCTCTCTAAAAGGCCCACTTTTATCA ATCGGGGAAATGGAAGCGATCAAAAAGATGAACTATAATGGTTGGCGAAGCAAAGTTCTTGACATAACTTATTCAATAAAACGGGGCAGGAAGGGATTGG AGGAGACTTTAGATAGGATTTGTACTGAAGCTCATGAGGCAATCAAGGAAGGTTATACTGTGTTGGTTCTTTCTGACAGAGCCTTCTCATCAAAGCGTGT TGCTGTCAGCTCCCTCTTGGCTGTTGGCGCTGTCCACCAATATCTTGTAAAAAAGCTTGAGCGTACTCAAGTTGGGTTGATAGTTGAATCTGCTGAACCA CGTGAAGTGCACCATTTCTGTACATTGGTTGGTTTTGGTGCAGATGCCATCTGCCCATACTTAGCCATAGATGCCATTTGGAGATTACAGGTTGATGGTA AGATCCCACCAAAATCCACTGGCGAGTTACACTCAAAGGATGAGCTAGTCAAGAAGTATTTCAAAGCAAGCAACTATGGCATGATGAAGGTGCTTGCGAA AATGGGAATTTCAACTTTGGCATCCTACAAGGGTGCTCAGATTTTTGAAGGGCTGGGCCTTTCATCAGAAGTGATTGACAAGTGCTTTGCAGGAACCCCA AGCAGGGTAGAAGGAGCAACATTTGAGATGCTTGCTCATGATTCACTTCGTTTGCATGAGTTGGCGTTTCCCTCCCGTGCTCTCCCTCCTGGAAGTGCAG AAGCTGTAGCTCTTCCCAATCCTGGGGATTATCATTGGAGAAAAGGTGGTGAGATTCACCTTAATGATCCTCTTGCTATTGCAAAACTTCAAGAAGCTGC CAGAGGTAATAGTGTGGCTGCCTATAAGGAATATTCTAAGCGCATTCAGGAGTTAAACAAAGCTTGTAATTTGCGTGGGCTTTTGAAGTTCAAAGTGGCA GATGTGAAAGTTTCTTTGGATGAAGTGGAACCAGCCAGTGAAATTGTTAAACGGTTCTGTACTGGGGCTATGAGTTATGGATCAATATCATTGGAGGCAC ACACCACGTTGGCTCAGGCTATGAATAAAATTGGAGGAAAATCAAATACAGGTGAGGGAGGTGAACAACCATCTCGTATGGAGCCTCTTCCTGATGGTTC AATGAATCCAAAGAGGAGTGCTATTAAGCAAGTTGCAAGTGGGAGATTTGGAGTTTCAAGTTACTATCTTACAAATGCTGATGAACTGCAGATAAAGATG GCTCAGGGTGCCAAGCCTGGTGAAGGAGGTGAGCTTCCTGGTCACAAGGTCATAGGAGACATTGCAGTTACCAGAAATTCTACTGCAGGGGTGGGTCTTA TTAGTCCTCCTCCCCATCATGATATCTATTCAATTGAAGACCTTGCCCAATTGATTCATGACCTTAAGAATGCCAATCCATCAGCAAGAATAAGTGTCAA GTTGGTATCTGAAGCTGGCGTGGGAGTAATTGCCAGTGGGGTGGTGAAGGGACATGCTGATCACGTTTTGATCTCAGGCCATGATGGAGGTACAGGTGCT TCTAGATGGACTGGCATCAAGAGTGCTGGGCTCCCATGGGAACTTGGTTTGGCTGAGACCCATCAAACACTTGTTGCCAATGACCTTCGTGGCCGAACAG TTCTTCAGACTGATGGCCAACTAAAAACTGGCCGTGATGTGGCCATTGCGGCTCTTCTTGGTGCTGAAGAATTTGGCTTCAGCACTGCCCCCCTTATAAC ACTTGGCTGCATCATGATGCGAAAGTGCCATAAGAACACCTGTCCCGTAGGCATTGCTACTCAAGATCCAGTGCTGAGGGATAAGTTTGCTGGAGAACCA GAACACGTTATTAACTTCTTCTTTATGCTAGCAGAGGAGCTCAGAGAGATCATGGCTCAGCTTGGTTTCCGTACTATGAATGAGATGGTTGGTCGTTCAG ACATGCTTGAAGTTGATAAAGAAGTTGTTAAGAGCAATGAGAAGCTGGAAAATATTGATCTCTCCTCGTTACTTAGACCTGCTGCTGACATTCGACCTGG AGCTGCCCAATATTGTGTCCAAAAGCAGGATCATGGTTTGGACATGGCATTGGATCAAAAACTCATCAAACTTTCTGAGGCTGCATTGGAAAAAAGTCTT CCTGTGTACATTGAAACACCTATCCGCAATGTGAACCGTGCTGTCGGAACAATGCTTAGCCATGAAGTTACTAAGCGTTACCACTTGGCAGGGCTTCCTG CCGATACTATCCATATCAAACTCAAAGGAAGTGCAGGGCAGAGCCTGGGAGCTTTTCTTTGCCCAGGCATTATGCTGGAGCTGGAAGGTGATGGCAATGA CTATGTCGGTAAAGGATTATCAGGTGGGAAGATTGTAGTTTATCCTCCAAAAGGAAGCCTCTTCGATCCGAAAGAGAACATTATAATTGGTAATGTAGCT CTTTATGGAGCCACAGGTGGTGAAGCATATCTTAATGGAATGGCAGCAGAAAGATTTTGTGTCCGTAATTCTGGAGCAAGGGCTGTTGTAGAAGGTATTG GTGATCATGGCTGCGAGTACATGACAGGTGGGACTATTGTTGTTCTTGGGAAAACTGGCAGGAATTTTGCTGCTGGTATGAGTGGCGGCGTTGCTTATGT TCTCGATTTGGATGGGAAATTCAAATCTCGATGCAATCTTGAACTTGTTGATCTTGATAAAGTTGAGGAGGAGGAGGACATTATGACTCTAAAAATGATG ATACAACAACACCAGCGTCACACAAACAGCCTTCTAGCTAGAGAAGTACTTGCTGATTTTGATAATCTTCTGCCTAAGTTTATCAAGGTCTTTCCCAGGG ATTACAAACGTGTTCTTGCAAACATGAAAGAGGAATCTGCTTCAAAAGAGGCTGCTGAGCTTGCTGCTAAAGAAGCCGAGGAGAAAAATGAAGCAGAGTT GAGGGAGAAAGATGCTTTTGAGGAGCTCAAGAAGATGGCAGCTGCATCCTTGAATGGGAAATCCAATCAGGTAGTAGAAGATGAACCACTGAAAAGGCCT ACCCGGGTTAATAATGCTGTCAAACATAGAGGCTTCATTGCTTATGAGCGTGAAGGTGTTCAATACAGAGATCCTAATGTTCGAATGAATGACTGGAAGG AAGTTATGGAGTCGTCAAAACCTGGCCCTCTATTAAATACGCAGTCGGCCCGTTGCATGGACTGTGGCACTCCTTTCTGTCACCAGGAAAACTCGGGATG CCCTCTTGGAAACAAAATTCCTGAATTTAATGAATTAGTGCACCAAAATAGGTGGCGCGAAGCATTAGACAGGTTGCTTGAGACAAATAACTTCCCAGAG TTCACTGGCAGAGTGTGCCCTGCACCTTGTGAAGGTTCCTGTGTTCTTGGCATAATTGATGATCCTGTCTCAATAAAAAACATTGAATGTTCAATTATTG ACAAGGCTTTTGAGGAGGGTTGGATGGTGCCGCGGCCTCCCCTCAAGAGAACTGGGAAACGAGTGGCTATTGTTGGAAGTGGGCCTTCTGGTTTGGCTGC TGCAGATCAACTAAACAAAAGGGGTCATTTGGTGACTGTGTATGAGCGTGCTGATCGAATTGGAGGGCTAATGATGTATGGAGTTCCCAACATGAAAACT GACAAAGTGGATATAGTTCAACGTCGTGTTAATCTTATGGCCAAGGAAGGCATCAATTTTGTGGTCAATGCTAATGTTGGTATCGACCCTCTGTACTCTC TTGATCAGCTAAGACAGGAGAACGATGCTATTGTTTTGGCAGTGGGAGCCACAAAACCTAGGGACCTTCCGGTACCTGGTCGGGAGATGTCTGGTGTCCA TTTTGCCATGGAGTTTCTTCACAAAAATACCAAAAGTTTGCTTGACAGCAATCTACAGGATGGTAACTACATATCTGCAAAGGGCAAGAAAGTAGTTGTC ATTGGTGGAGGTGACACTGGAACAGATTGCATGGGGACATCTATTCGCCACGGTTGCAGTGGCGTTGTAAATCTAGAGCTTCTACCTGAGCCACCACAAA CTAGAGCTCCGGGCAACCCATGGCCACAGTGGCCTAAAGTATTCCGGGTAGACTATGGGCACCAGGAAGCTGCTTCCAAGTTTGGGAAAGACCCAAGGTC TTATGAGGTGTTGACTAAGCGTTTCATTGGAGACGAAGATGGGAGCGTGAAGGGACTTGAGGTGGTACGTGTCCATTGGGAGAAGGATGCTAGTGGGAAA TTTCAGTATAAGGAGGTTGAGGGCTCTGAGGAAATTATTGAGGCTGACCTAGTCCTGCTAGCTATGGGATTCCTTGGTCCTGAACCGAATGTGGCAAAGA AGTTGGGCTTGGAGCAAGATAATCGATCAAACTTCAAGGCAGAATATGGCCGCTTCTCAACCAATGTGGAAGGGATCTTTGCCGCCGGGGATTGCAGGCG AGGCCAGTCGCTAGTTGTATGGGCAATATCAGAAGGACGACAAGCTGCTTCCCAGGTGGACAAATATCTCATGAAAGAAGAGGATGTTACAATTAGCACT GATAACACCCAGGATGAACTTGTCAAGAAGCACGAAGACCTCACCAAGAGGCATCAAGACAGCAGCAAACACACTGTCATGACATAA
AA sequence Show only first row Show all	>Potri.012G011700.2 pacid=42782578 polypeptide=Potri.012G011700.2.p locus=Potri.012G011700 ID=Potri.012G011700.2.v4.1 annot-version=v4.1 MSAAASSSSAILQPKSVKSSISSLNKSSYCVFSPSLNVATAASISRRRGRATRCVSARNSAVVERKSFLGSKVRGSPSERLHFWLSEGPGREPKLRVVVR SALSGVPEKPLGLYDPSFDKDSCGVGFVAELSGENSRKTVNDALEMSVRMAHRGACGCETNTGDGAGILVALPHDYYKEVAKDIGFELPPSGEYAVGMFF LPTSDNRREESKNVFTKVAESLGHTVLGWRPVPTDNSALGNAALQTEPVIEQVFLTATPRSKADFEKQMYILRRVSMVAITAALNLQYGGVKDFYICSLS SRTVVYKGQLKPDQLKAYYYADLGNETFTSYMAMVHSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNVNWMKAREGLLKCKELGLSKNEMKKILPIVDA SSSDSGAFDGVLELLIRSGRTLPEAVMMMIPEAWQNDKNMDPQRRALYEYSSALMEPWDGPALISFTDGHYLGATLDRNGLRPGRFYVTRSGRVIMASEV GVVDIPPEDVLRKGRLNPGMMLLVDFEKHTVVDDEALKQQYSLARPYGEWLKRQKIELSDIVNSVQESDKVAPAISGVVAASDDDDSMVHMGIHGLLAPL KSFGYTVEALEMLMLPMAKDGTEPLGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGDLTETTEEQCRRLSLKGPLLS IGEMEAIKKMNYNGWRSKVLDITYSIKRGRKGLEETLDRICTEAHEAIKEGYTVLVLSDRAFSSKRVAVSSLLAVGAVHQYLVKKLERTQVGLIVESAEP REVHHFCTLVGFGADAICPYLAIDAIWRLQVDGKIPPKSTGELHSKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEGLGLSSEVIDKCFAGTP SRVEGATFEMLAHDSLRLHELAFPSRALPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRIQELNKACNLRGLLKFKVA DVKVSLDEVEPASEIVKRFCTGAMSYGSISLEAHTTLAQAMNKIGGKSNTGEGGEQPSRMEPLPDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKM AQGAKPGEGGELPGHKVIGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNANPSARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGA SRWTGIKSAGLPWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLRDKFAGEP EHVINFFFMLAEELREIMAQLGFRTMNEMVGRSDMLEVDKEVVKSNEKLENIDLSSLLRPAADIRPGAAQYCVQKQDHGLDMALDQKLIKLSEAALEKSL PVYIETPIRNVNRAVGTMLSHEVTKRYHLAGLPADTIHIKLKGSAGQSLGAFLCPGIMLELEGDGNDYVGKGLSGGKIVVYPPKGSLFDPKENIIIGNVA LYGATGGEAYLNGMAAERFCVRNSGARAVVEGIGDHGCEYMTGGTIVVLGKTGRNFAAGMSGGVAYVLDLDGKFKSRCNLELVDLDKVEEEEDIMTLKMM IQQHQRHTNSLLAREVLADFDNLLPKFIKVFPRDYKRVLANMKEESASKEAAELAAKEAEEKNEAELREKDAFEELKKMAAASLNGKSNQVVEDEPLKRP TRVNNAVKHRGFIAYEREGVQYRDPNVRMNDWKEVMESSKPGPLLNTQSARCMDCGTPFCHQENSGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPE FTGRVCPAPCEGSCVLGIIDDPVSIKNIECSIIDKAFEEGWMVPRPPLKRTGKRVAIVGSGPSGLAAADQLNKRGHLVTVYERADRIGGLMMYGVPNMKT DKVDIVQRRVNLMAKEGINFVVNANVGIDPLYSLDQLRQENDAIVLAVGATKPRDLPVPGREMSGVHFAMEFLHKNTKSLLDSNLQDGNYISAKGKKVVV IGGGDTGTDCMGTSIRHGCSGVVNLELLPEPPQTRAPGNPWPQWPKVFRVDYGHQEAASKFGKDPRSYEVLTKRFIGDEDGSVKGLEVVRVHWEKDASGK FQYKEVEGSEEIIEADLVLLAMGFLGPEPNVAKKLGLEQDNRSNFKAEYGRFSTNVEGIFAAGDCRRGQSLVVWAISEGRQAASQVDKYLMKEEDVTIST DNTQDELVKKHEDLTKRHQDSSKHTVMT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	0	1	Pt-GLT1.3
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.005G181700 [exp]	5.74	0.6773
AT1G67420			Zn-dependent exopeptidases sup...		Potri.010G060500 [exp]	5.91	0.6320
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	8.48	0.6528
AT4G23440			Disease resistance protein (TI...		Potri.003G129600 [exp]	12.96	0.6385
AT2G45670			calcineurin B subunit-related ...		Potri.014G074300 [exp]	18.76	0.6370
AT4G14290			alpha/beta-Hydrolases superfam...		Potri.008G200400 [exp]	19.33	0.6059
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	20.19	0.6206
AT1G79570			Protein kinase superfamily pro...		Potri.005G095200 [exp]	20.59	0.5723
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.017G133200 [exp]	25.49	0.6172
AT1G26580			unknown protein		Potri.017G091900 [exp]	26.72	0.6075

Compare expression of checked genes

Potri.012G011700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.