Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44930 206 / 4e-60 Plant protein of unknown function (DUF247) (.1) AT2G28580 198 / 7e-57 Plant protein of unknown function (DUF247) (.1) AT4G31980 157 / 3e-41 unknown protein AT3G60470 150 / 3e-39 Plant protein of unknown function (DUF247) (.1) AT1G67150 144 / 5e-38 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50170 140 / 1e-35 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 139 / 2e-35 Plant protein of unknown function (DUF247) (.1) AT3G50150 139 / 2e-35 Plant protein of unknown function (DUF247) (.1) AT3G50160 120 / 4e-29 Plant protein of unknown function (DUF247) (.1) AT3G50130 119 / 2e-28 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G012000 [exp] 922 / 0 AT2G44930 201 / 8e-58 Plant protein of unknown function (DUF247) (.1) Potri.012G012500 [exp] 438 / 6e-150 AT2G44930 211 / 3e-62 Plant protein of unknown function (DUF247) (.1) Potri.014G053900 [exp] 337 / 8e-111 AT2G44930 214 / 1e-63 Plant protein of unknown function (DUF247) (.1) Potri.014G053700 [exp] 324 / 2e-105 AT3G60470 164 / 1e-44 Plant protein of unknown function (DUF247) (.1) Potri.012G011800 [exp] 309 / 3e-100 AT2G44930 173 / 1e-48 Plant protein of unknown function (DUF247) (.1) Potri.012G035100 [exp] 305 / 2e-98 AT2G44930 164 / 3e-45 Plant protein of unknown function (DUF247) (.1) Potri.012G035001 [exp] 293 / 5e-94 AT2G44930 164 / 4e-45 Plant protein of unknown function (DUF247) (.1) Potri.014G054100 [exp] 226 / 5e-67 AT2G44930 192 / 1e-54 Plant protein of unknown function (DUF247) (.1) Potri.005G008500 [exp] 219 / 7e-65 AT2G44930 194 / 9e-56 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038338 [exp] 147 / 1e-38 AT4G31980 251 / 5e-76 unknown protein Lus10039780 [exp] 144 / 8e-38 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 139 / 8e-36 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 138 / 2e-35 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 127 / 1e-31 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 127 / 1e-31 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 117 / 6e-28 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 106 / 1e-24 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 102 / 7e-23 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10018320 [exp] 101 / 1e-22 AT3G50120 210 / 2e-61 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.012G012202.1 pacid=42783275 polypeptide=Potri.012G012202.1.p locus=Potri.012G012202 ID=Potri.012G012202.1.v4.1 annot-version=v4.1 ATGGCCGGTGGCAGTGGTTCAGCGAGCACTTCAATTGATATTGAAGAGCTTTTGAAAGACTTTCCAGATAGAATGCAAACGACCTTGCCGGAAGAGATGT GTATCTACCATGTCCCGGTAGACATTCGTCAAGTAAATAAAGATGCCTATACCCCTCAGGTGATTTGTATAGGCCCAATTCACCAAAAGAATGAAAACCA AGTTATGAAAGAACTGAAGCGAAGATATTTCAAACAATTCCTTAACAGACTGCCCGTGGGAAAACGGAAACCGGTTCTGGAGGACCTTGTGGAGACCATT AAAGGTCGTGTAGATAAAATCCGCAATTGTTATGAAGATGCTGCATATGAACTTTGCAAGGATCCAAAAGGTTGTGAATTTAAAATCCACAATTGTTATG AAGATGCTGCATTTGAACTTCGCAAGGATCCAAAGGATCGTGAAGTTGAAATCCTCGATTGTTCTGAAGATGATTCTTCTAAACGTTGCGAGGATCAAAA GGTGTTTTGGAAGATGATTCTATGGGATGCTGTATTCATCTTTGAGCTCTTCTTGAAGAATAGAGAATTTAAGGAAGATAAAAAATCTCAAGGCAAAGAA GATACAGAGAAATACCAGGAGAAATACCAGGAGAAATATAAGTACGATTATATAATAGCTAAACCCTGGCTGAGATCTGCTGTGCAACGGGACCTGATAT TACTCGAGAATCAGCTGCCGTTCTGTATTCTTCAAGTTTTATATGGTATTGTCTCCAAATATAATATAACCGGTTACTCTTGTCCACCTAAAACCGGTTG CTCTTGTCTACCTGAAACCGATAAAACCTGTTGTTCTTGTCTACCTGAAACCGATTGCTGTTGTCCATGTATAGCTTTCCGGGAACTTACTTGCACGTTC TTTAAGAACTACAACAAGAACAAGAACAAAACCAGTCCTGAGAAACCATTACATTTCACTGATCTGGTAAGATCTTTTTTTCTTCCCAAAGACCTAAACA CCAAAGATCCAAACCCAAAAGACCCAAGAACAATTAAAAAACTTCACAGAGCAACTAGGCTGCACCAAGCAGGAATGAAGTTCAAGCCAAAGAAGCCAGT TGAATATAACATAAGATCATGGAAGGAAGTTGATTCTATCAAGAAAGGTGAGTTACATTTTCCAACCCTTGTGATGGACGATCATACTGAATGTCTCTTT CGAAACCTGATGGCGCTGGAGCAGTGTCATTATCCTAATGAAGCGTTCATCTGCGAGTATGTTAAATTCTTGGATTTTCTTGTGGATACCGAAGAAGATG CAGATTTGCTCATTAAAAGTGAAGTTATTGTTAATAGGCTTGGAGAAAGTGATGAAGTGGCTAAGTTGATTAACAAACTTTGCCAAGGAATCGTAGAAGT CTCTTCGCGTTATGACAGGCTCGCCAAAGATTTAAATGCTTACTATGACAACCCGTGTAACAATAGTAAGGCCTTCCTCAGAAGAGAGTATTTCAGGAAT GTTTGGATAGGCACTGGAACCGTTGTTGCATTGATCGTCCTGTTCATCACTTTGTTCAGCTTTGTTCGATCTTTTTTTTAG
AA sequence Show only first row Show all	>Potri.012G012202.1 pacid=42783275 polypeptide=Potri.012G012202.1.p locus=Potri.012G012202 ID=Potri.012G012202.1.v4.1 annot-version=v4.1 MAGGSGSASTSIDIEELLKDFPDRMQTTLPEEMCIYHVPVDIRQVNKDAYTPQVICIGPIHQKNENQVMKELKRRYFKQFLNRLPVGKRKPVLEDLVETI KGRVDKIRNCYEDAAYELCKDPKGCEFKIHNCYEDAAFELRKDPKDREVEILDCSEDDSSKRCEDQKVFWKMILWDAVFIFELFLKNREFKEDKKSQGKE DTEKYQEKYQEKYKYDYIIAKPWLRSAVQRDLILLENQLPFCILQVLYGIVSKYNITGYSCPPKTGCSCLPETDKTCCSCLPETDCCCPCIAFRELTCTF FKNYNKNKNKTSPEKPLHFTDLVRSFFLPKDLNTKDPNPKDPRTIKKLHRATRLHQAGMKFKPKKPVEYNIRSWKEVDSIKKGELHFPTLVMDDHTECLF RNLMALEQCHYPNEAFICEYVKFLDFLVDTEEDADLLIKSEVIVNRLGESDEVAKLINKLCQGIVEVSSRYDRLAKDLNAYYDNPCNNSKAFLRREYFRN VWIGTGTVVALIVLFITLFSFVRSFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44930			Plant protein of unknown funct...		Potri.012G012202 [exp]	0	1
AT2G44930			Plant protein of unknown funct...		Potri.012G012000 [exp]	1.00	0.9797
AT3G07270			GTP cyclohydrolase I (.1.2)		Potri.014G195000 [exp]	1.41	0.9480
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Potri.012G012600 [exp]	6.32	0.9301
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.004G095800 [exp]	6.70	0.9392
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	8.12	0.9286
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G119000 [exp]	10.81	0.9219
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023400 [exp]	12.24	0.8927
AT1G63245		CLE14	CLAVATA3/ESR-RELATED 14 (.1)		Potri.015G139900 [exp]	12.64	0.9085
					Potri.012G012100 [exp]	12.96	0.9220
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Potri.011G025300 [exp]	16.43	0.9272

Compare expression of checked genes

Potri.012G012202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.