Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71400 258 / 4e-74 AtRLP12 receptor like protein 12 (.1) AT3G25010 250 / 4e-71 AtRLP41 receptor like protein 41 (.1) AT3G25020 249 / 1e-70 AtRLP42 receptor like protein 42 (.1) AT5G25910 244 / 3e-69 AtRLP52 receptor like protein 52 (.1) AT3G28890 239 / 2e-68 AtRLP43 receptor like protein 43 (.1.2) AT2G33060 240 / 4e-68 AtRLP27 receptor like protein 27 (.1) AT3G05650 239 / 2e-67 AtRLP32 receptor like protein 32 (.1) AT2G32680 234 / 1e-65 AtRLP23 receptor like protein 23 (.1) AT3G05370 232 / 7e-65 AtRLP31 receptor like protein 31 (.1) AT5G40170 229 / 2e-64 AtRLP54 receptor like protein 54 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014625 [exp] 1190 / 0 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G028101 [exp] 1016 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G025100 [exp] 1015 / 0 AT3G11080 343 / 4e-103 receptor like protein 35 (.1) Potri.011G055200 [exp] 1008 / 0 AT3G25020 312 / 6e-92 receptor like protein 42 (.1) Potri.012G026900 [exp] 1007 / 0 AT3G25010 315 / 2e-93 receptor like protein 41 (.1) Potri.012G010445 [exp] 994 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G029000 [exp] 988 / 0 AT3G05660 373 / 2e-114 receptor like protein 33 (.1) Potri.012G027400 [exp] 974 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G008911 [exp] 960 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 270 / 2e-78 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10026415 [exp] 271 / 2e-77 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 250 / 5e-70 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003389 [exp] 248 / 1e-69 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10011039 [exp] 248 / 9e-69 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10032335 [exp] 243 / 2e-68 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011064 [exp] 236 / 1e-65 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10006825 [exp] 232 / 7e-64 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10014910 [exp] 228 / 3e-63 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10004310 [exp] 222 / 3e-61 AT2G33060 358 / 6e-111 receptor like protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G012535.1 pacid=42782930 polypeptide=Potri.012G012535.1.p locus=Potri.012G012535 ID=Potri.012G012535.1.v4.1 annot-version=v4.1 ATGCTTTACGGCACCCTCCATCCCAATAGCACCCTCTTCTCCCTGCATCATCTTCAACAGCTCGACCTCTCTGACAATGATTTCAATAGCTCCCATATTT CTTCTCGATTTGGCCAGTTTTCCAATCTGACACTTCTTAACCTAAATTACTCAATCTTTGCAGGTCAAGTTCCGTCGGAAATAATTCACCTCTCCAAATT GGTTTCACTTGATCTCTCTCAGAATGACGATCTGAGTCTAGAACCAATTTCTTTTGACAAGCTTGTTCGAAACCTAACCAATCTTAGAGAACTCGATTTG AGTGATGTAAACATGCCACTACTTGTGCCCAGTTCCTTGATGAATCTGTCCTCTTCTCTGTCATCACTGAAACTCAATTACTGTGGATTGCAAGGAAAAC TCCTATCCTCAATGGGGAAATTTAAGCACCTGCAGTACTTGGATCTTGGAGGGAACAATCTTACTGGTTCAATTCCATATGATTTTGAGCAACTCACTGA GTTGGTTTCACTTGATCTCTCTATAAACTTCTATCTAAGTCTAGAACCAATTTTTTTTGACAAGATTGTTCAAAACCTAACCAGGCTAAGAGATCTCATT TTGGGTTATGTAAATATGTCTTTGGTTGCACCTAGTTCCTTGACGAATCTGTCCTCTTCTTTGTCATCTCTTTCTCTTTGGGGTTGTGGATTGCAGGGGA AATTCCCGGGTTACATCTTTCTCCTCCCAAACCTTGAATCACTGGATCTATCATACAACGATGGCCTCACTGGCTCGTTTCCTTCGACCAATTTGAGTAA TGTCCTCTCTCGGTTGGATCTTTCTAATACAAGAATTTCAGTTTATTTAGAAAACGACTTAATCAGTAATCTAAAGTCATTAGAATATATGTCTCTTCGT AATTGTAACATTATAATGTCAGATATAGCCCTGCTTAGTAATCTCACACAGCTCATCAATTTAGACCTCTCAAGTAACAATTTTAGCGGTCAGATCCCAT CATCATTTGGTAATCTCACACAGCTCACCTATTTAGATCTCTCAAGTAACAATTTTAGCGGTCAAATTCCAGATTCTTTGGGTAGCCTAGTCAATCTTTC ATATTTAGTTTTATCAAATAATCAACTAAGAGGACCTATCCATTCTCAATTAAAAACCCTTTCAAATCTATTGGGTCTAAGTTTATATGGTAACTTGTTC AATGGAACAATACCATCCTTTTTGTTTGCTCTTCCTTCTTTGTATTATCTTGACCTTCATGACAACAATCTCATAGGGAATATAAGTGAACTCCAACACT ATTCATTGATTTACCTTGATTTGAGCAATAACCACTTGCATGGTACAATCCCAAGTTCGATTTTCAAACAAGAGAACTTGCGAGTCCTTATTCTTGCGTC CAATAGTAAATTGACAGGTGAGATTTCTTCTTCTATTTGCAAGCTGAGATACCTTCGGGTCATGGACTTGTCCAACAGCAGCTTTAGTGGTTCTATGCCA CTATGTTTGGGGAACTTCAGCAACATGCTCTCGGTATTGCATCTAGGCATGAACAATCTTCAAGGCACCATCCCTTCAACATTTTCAAAGGATAATAGCT TGGAATATCTCAACCTCAATGGAAATGAATTAGAAGGGAAAATATCACCGTCTATCATCAACTGCACAATGTTGGAAGTGCTTGATCTTGGCAACAACAA GATTGAGGATGCATTTCCCTACTTTCTAGAAACGCTTCCAAAGCTGCAAATTCTTGTCCTAAAATCGAATAAACTCCAAGGTTTTGTGAAGGGTCCAACT GCACATAATTCCTTCTCTAAATTACAGATTCTTGACATCTCTGACAATGGTTTTAGTGGGTCATTGCCAATTGGGTATTTCAATAGTCTTGAAGCAATGA TGGCCTCAGATCAAAACATGATTTACATGAAAGCAACAAATTACTCTAGCTATGTCTATTCCATAGAAATGACATGGAAAGGTGTAGAAATTGAGTTTCC AAAGATACAAAGTACCATCAGAATACTTGATTTGTCAAAAAACAATTTCATTGGAGAGATTCCAAAGGTGATCGGAAAGCTTAAAGCACTCCAACAACTC AACCTTTCTCATAATTCCCTTACAGGTCATATCCAATCATCATTAGGAAATTTGACCAATTTGGAATCACTAGATCTATCTTCAAATTTGCTTACCGGAA GGATTCCAACGCAGCTGGGGGGTCTAACATTTCTTGCAATCCTAAACCTTTCACATAACCAGCTCGAGGGCGTATACCAAGTGGAGAGCAGTTCAACACC TTTAATCCAAGCTCATTTGAAGGAAACTTGGGTTTATGTGGATTTCAAGTACTAA
AA sequence Show only first row Show all	>Potri.012G012535.1 pacid=42782930 polypeptide=Potri.012G012535.1.p locus=Potri.012G012535 ID=Potri.012G012535.1.v4.1 annot-version=v4.1 MLYGTLHPNSTLFSLHHLQQLDLSDNDFNSSHISSRFGQFSNLTLLNLNYSIFAGQVPSEIIHLSKLVSLDLSQNDDLSLEPISFDKLVRNLTNLRELDL SDVNMPLLVPSSLMNLSSSLSSLKLNYCGLQGKLLSSMGKFKHLQYLDLGGNNLTGSIPYDFEQLTELVSLDLSINFYLSLEPIFFDKIVQNLTRLRDLI LGYVNMSLVAPSSLTNLSSSLSSLSLWGCGLQGKFPGYIFLLPNLESLDLSYNDGLTGSFPSTNLSNVLSRLDLSNTRISVYLENDLISNLKSLEYMSLR NCNIIMSDIALLSNLTQLINLDLSSNNFSGQIPSSFGNLTQLTYLDLSSNNFSGQIPDSLGSLVNLSYLVLSNNQLRGPIHSQLKTLSNLLGLSLYGNLF NGTIPSFLFALPSLYYLDLHDNNLIGNISELQHYSLIYLDLSNNHLHGTIPSSIFKQENLRVLILASNSKLTGEISSSICKLRYLRVMDLSNSSFSGSMP LCLGNFSNMLSVLHLGMNNLQGTIPSTFSKDNSLEYLNLNGNELEGKISPSIINCTMLEVLDLGNNKIEDAFPYFLETLPKLQILVLKSNKLQGFVKGPT AHNSFSKLQILDISDNGFSGSLPIGYFNSLEAMMASDQNMIYMKATNYSSYVYSIEMTWKGVEIEFPKIQSTIRILDLSKNNFIGEIPKVIGKLKALQQL NLSHNSLTGHIQSSLGNLTNLESLDLSSNLLTGRIPTQLGGLTFLAILNLSHNQLEGVYQVESSSTPLIQAHLKETWVYVDFKY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G012535 [exp]	0	1
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G014625 [exp]	1.00	0.9945
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G063900 [exp]	7.74	0.9477
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.001G063909 [exp]	8.48	0.9474
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145512 [exp]	8.66	0.9474
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.018G144800 [exp]	10.24	0.9462
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Potri.009G019200 [exp]	13.41	0.9241
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G144700 [exp]	13.67	0.9289
AT1G06760			winged-helix DNA-binding trans...		Potri.005G219800 [exp]	15.00	0.9198	HON904
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065327 [exp]	16.12	0.9322
AT5G38210			Protein kinase family protein ...		Potri.004G097100 [exp]	16.88	0.9280

Compare expression of checked genes

Potri.012G012535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.