Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01500 50 / 3e-08 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G34390 48 / 2e-07 ARF ARF22 auxin response factor 22 (.1) AT1G35520 48 / 2e-07 ARF ARF15 auxin response factor 15 (.1) AT1G34310 46 / 1e-06 ARF ARF12 auxin response factor 12 (.1) AT2G46870 45 / 2e-06 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT1G01030 45 / 2e-06 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT4G21550 45 / 3e-06 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT1G43950 44 / 5e-06 ARF ARF23 auxin response factor 23 (.1) AT4G30080 44 / 7e-06 ARF ARF16 auxin response factor 16 (.1) AT2G28350 43 / 1e-05 ARF ARF10 auxin response factor 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G012950 [exp] 228 / 6e-79 AT1G35520 49 / 9e-08 auxin response factor 15 (.1) Potri.015G016901 [exp] 172 / 8e-57 AT1G34390 49 / 1e-07 auxin response factor 22 (.1) Potri.015G017000 [exp] 167 / 8e-55 AT1G34390 52 / 1e-08 auxin response factor 22 (.1) Potri.015G016700 [exp] 167 / 8e-55 AT1G34390 46 / 1e-06 auxin response factor 22 (.1) Potri.015G016450 [exp] 161 / 2e-52 AT4G01500 47 / 4e-07 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G014850 [exp] 157 / 8e-51 AT4G01500 45 / 3e-06 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G015275 [exp] 155 / 2e-50 AT4G01500 44 / 4e-06 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G015501 [exp] 155 / 3e-50 AT1G13260 46 / 1e-06 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.015G015650 [exp] 155 / 5e-50 AT1G13260 50 / 6e-08 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026212 [exp] 49 / 8e-08 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10030240 [exp] 49 / 2e-07 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10041340 [exp] 45 / 3e-06 AT3G61830 370 / 2e-122 auxin response factor 18 (.1) Lus10019940 [exp] 45 / 3e-06 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10026510 [exp] 45 / 3e-06 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10041487 [exp] 45 / 3e-06 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021326 [exp] 45 / 4e-06 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10021467 [exp] 44 / 8e-06 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 43 / 2e-05 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 43 / 2e-05 AT4G30080 622 / 0.0 auxin response factor 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G012850.1 pacid=42783973 polypeptide=Potri.012G012850.1.p locus=Potri.012G012850 ID=Potri.012G012850.1.v4.1 annot-version=v4.1 ATGGCAAGTTTCTCAAAGATCCTCAGCAAGACTGATATTAAGAAGAGACTGACAGTGCCTATCAAGTTTCTCAAATCTCTTCCATCATTCGACGGGGGCC ATGCCGTAAAGTTTGAAGCTAGAGATGAGGGAGGCGAAATCTGGGCCTTTCAGTGCTCCGTCCGCCGGAGAGGGCACCCGAAGCCAGTCCTTACACGGGG TTGGAAGGCTTTCATCAACAGCAAGAAACTTAAAACTGGCGACAAGGTCAGTTTTATTAAATGTAAGAATCGAGCTACCGCGAAAACCTCTTACAGAGTT CGTGCTGAAAATGAAATCAAGATCTTTGGAGCTAGTATTGGGCATGCTCCATTGTAG
AA sequence Show only first row Show all	>Potri.012G012850.1 pacid=42783973 polypeptide=Potri.012G012850.1.p locus=Potri.012G012850 ID=Potri.012G012850.1.v4.1 annot-version=v4.1 MASFSKILSKTDIKKRLTVPIKFLKSLPSFDGGHAVKFEARDEGGEIWAFQCSVRRRGHPKPVLTRGWKAFINSKKLKTGDKVSFIKCKNRATAKTSYRV RAENEIKIFGASIGHAPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G012850 [exp]	0	1
					Potri.019G016104 [exp]	127.62	0.6367
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013501 [exp]	150.29	0.6309
AT1G66920			Protein kinase superfamily pro...		Potri.012G003301 [exp]	159.82	0.6161

Compare expression of checked genes

Potri.012G012850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.