Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11080 366 / 1e-111 AtRLP35 receptor like protein 35 (.1) AT3G05660 357 / 1e-108 AtRLP33 receptor like protein 33 (.1) AT3G05650 356 / 1e-108 AtRLP32 receptor like protein 32 (.1) AT1G71400 350 / 9e-107 AtRLP12 receptor like protein 12 (.1) AT3G11010 342 / 4e-103 AtRLP34 receptor like protein 34 (.1) AT5G27060 342 / 2e-102 AtRLP53 receptor like protein 53 (.1) AT2G33060 330 / 1e-99 AtRLP27 receptor like protein 27 (.1) AT4G13920 331 / 3e-99 AtRLP50 receptor like protein 50 (.1) AT1G47890 329 / 2e-97 AtRLP7 receptor like protein 7 (.1) AT2G15080 318 / 1e-93 AtRLP19 receptor like protein 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005600 [exp] 1110 / 0 AT1G45616 379 / 3e-115 receptor like protein 6 (.1) Potri.012G014625 [exp] 1048 / 0 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G010300 [exp] 1030 / 0 AT3G11080 385 / 3e-118 receptor like protein 35 (.1) Potri.012G027400 [exp] 1030 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G007901 [exp] 1022 / 0 AT3G25010 300 / 6e-88 receptor like protein 41 (.1) Potri.012G010445 [exp] 1019 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G010101 [exp] 1016 / 0 AT1G45616 379 / 6e-115 receptor like protein 6 (.1) Potri.012G026900 [exp] 1011 / 0 AT3G25010 315 / 2e-93 receptor like protein 41 (.1) Potri.012G028101 [exp] 1008 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032335 [exp] 342 / 4e-103 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014910 [exp] 331 / 4e-99 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10024721 [exp] 324 / 1e-96 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10003389 [exp] 254 / 1e-70 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10011039 [exp] 256 / 2e-70 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10026415 [exp] 251 / 2e-69 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10002214 [exp] 236 / 7e-68 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10006825 [exp] 244 / 4e-67 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004313 [exp] 240 / 5e-67 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10042239 [exp] 240 / 9e-66 AT1G45616 395 / 1e-121 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G013435.1 pacid=42782813 polypeptide=Potri.012G013435.1.p locus=Potri.012G013435 ID=Potri.012G013435.1.v4.1 annot-version=v4.1 ATGCGAATCTTTACTTCTCATCTTTCGCTCAACATTCCAAATATACTTTCGAATCCTGTAAGGCCAGCCAACATGGGGTTTTCACCAGTACTGTCCCTCT CTCAATTTCTCTCTTCCATTCTGTTTCTCTTCCATTTTCACACAACAATTTCTTCATCAAACTACTCCTCTTCATCTCATTTCTGTGCTCCTGACCAAAG CCTTTCTTTGCTCCAATTCAAAGAGTCCTTTTCCATTACTAGCTCTGCTTCAGAGCGTTGCCAGCATCCCAAGACAGAGTCGTGGAGAGAGGGTACAGAC TGCTGCTCGTGGGATGGGGTCACTTGTGACATGAAAACCGGGCAAGTCACTGCACTGGACCTTGCTTGCAGCATGCTTTATGGCACCCTCCATTCCAATA GCACCCTCTTCTCCCTGCATCATCTTCAAAAGCTCGACCTCTCTGACAATGATTTCAACTTCTCCAATATTTCTTCTCGATTTGGCCAGTTTTCCAATTT GACACATCTTAACCTAAATTTCTCAGGCTTTGCGGGTCAAGTTCCGTCGGAAAGCTCTCATCTCTCCAAATTGGTTACACTTGATCTCTCTAGAAACCAC TATCTAAGTCTAGAACCAATTTCTTTTGACAAGCTTGTTCGAAATCTAACCCAGCTTAGAGAACTCGATCTGAGTTCAGTAGACATGTCATTGGTTGTAC CCAATTCCTTGATGAATCTGTCTTCTTCTTTGTCATCACTCATACTCAATTCGTGTAGATTGCAAGGAGAATTCCCATTCTCAATGAGAAAATTTAAGCA CCTCCAGCAGTTGGATCTTAGATACAACAATTTTTCAGGTTCAATTCCAGATGATCTTGGGCAACTCACTGAGTTGGTTTCAATTTATCTCTCTTACAAT GGCTATTTGAGTGTAGAACCAAGTTCTTTTGACAATATTATTCAAAACCTAACCAAGCTAAGAAATCTCCGTTTGGGTCTTGTAAATATGTCTTTGGTCA CACCTAATTCCTTGGCGAATCTGTCCTCATCCTTGTCAGATCTTGGCCCTTGGGGTTGTGGATTGAAAGGGAAGTTCCCAGGTAACATCTTTCTCCTACC AAACCTTCAAGTACTTGATTTGACAGACAACGACGACCTCACTGGCTCTTTTCCTTCATTCAATGCGAGTAATATCATAAGGTCATTGAGTCTTTCTCAT ACTGCAATTTCAGTTTATTTAGAAAATGACTTCTTCACAAATCTAAAGTTGTTGGAAGTTCTGGCTCTCAGACAATGTAATATCATAAGGTCAAATCTGA CCCTGATTGGTCATCTCACAGAGCTCACTAGTTTAAACCTTATAGGTAACAATTTAAGTGGTCAGATTCCATCATCATTTAAAAACCTTGTGCAACTTCA ATCCTTATATCTCGGTAACAATAATTTTTCAGGTAGGATTCCAGAGTTTTTAGGTAACCTTACCCTCCTTGAAAATTTAGGTTTATCCAATAATCAACTC TCAGGACCTATCCCTTCTCAAATAAGTACTCTTTCATTGAGATCGTTTGATTTGAGCAAAAACAACTTGCATGGTCCAATCCCAAGTTCAATTTTCAAAC AAGAGAACCTGGACGTCCTTTCTCTTGCATCCAACAATAAATTAACAGGTGAAATTTCTTCCTCTATTTGCAAGCTTAAAGTCCTTCGACTCCTTGATTT GTCTAACAACAGCTTGAGTGGTTTTATACCACAATGTTTAGGGAACTTTAGCAACTCTCTCTCAGTTTTGAATCTTGGCAAGAATAATTTTCAAGGCACT ATCTTTTCACCATTTTCAAAAGGGAATAATTTGGGATATCTCAACCTAAATGGCAATGAATTGGAAGGGAAAATACCATCGTCTATTATCAACTGCATGA TGCTACAAGTTCTTGATCTTGGTGACAATAAGATTGAGGACACATTTCCCTATTTTCTAGAAACGCTTCCAGAGCTGTATATCCTTGCCCTAAAGTCCAA TAAACTCCACGGTTTTGTGAATGGTCCGACTACTAAAAATTCATTCTCCAAATTGCGGGTCTTTGACATCTCCAACAATAATTTGAGTGGACCTTTACCA ATAGGGTATTTCAATAGTTTTGAAGCAATGATGGCCTATGATCAAAATCCATTTTACATGATGGCCTATTCCATAAAAGTGACATGGAAAGGGGTTGAGA TTGAGTTCGAGAAAATCCAAAGCACTCTTAGAATACTTGATTTGTCAAACAACAGTTTCACCGGAGAGATTCCAAAGGAGATCGGAAAGCTTAAAGCAGT TCGACAACTCAACCTCTCTCATAATTCCCTTACAGGCCATATTCAATCATCATTAGGAATGTTTACCAATCTGGAATCATTAGATTTGTCTTCGAATTTG CTTACCGGAAGGATTCCAGTACAGTTGGCAGATCTAACATTTCTTGCAGTCTTAGACCTTTCACATAACCGGCTTGAGGGGCCCGTACCCGGGGGAAAGC AGTTCAACACGTTCAATGCAAGCTCATTTGAAGGAAACTTGGACTTATGTGGATTCCCCATGCCAAAAGAATGCAATAATGACGAGGCACCACCATTGCA GCCATCAAACTTTCACGATGGAGATGATTCAAAATTCTTTGGAGAAGGATTTGGATGGAAAGCTGTGGCAATAGGGTATGGAAGTGGGTTTGTGTTTGGA GTCACAATGGGATACGTTGTGTTCAGAACAAGAAAACCAGCATGGTTTCTGAAAGTGGTTGAAGATCAATGGAATCTGAAGGCAAGAAGAACGAAGAAGA ATGCTCGTAGGAATGGTGCAAGAAGAAACTAA
AA sequence Show only first row Show all	>Potri.012G013435.1 pacid=42782813 polypeptide=Potri.012G013435.1.p locus=Potri.012G013435 ID=Potri.012G013435.1.v4.1 annot-version=v4.1 MRIFTSHLSLNIPNILSNPVRPANMGFSPVLSLSQFLSSILFLFHFHTTISSSNYSSSSHFCAPDQSLSLLQFKESFSITSSASERCQHPKTESWREGTD CCSWDGVTCDMKTGQVTALDLACSMLYGTLHSNSTLFSLHHLQKLDLSDNDFNFSNISSRFGQFSNLTHLNLNFSGFAGQVPSESSHLSKLVTLDLSRNH YLSLEPISFDKLVRNLTQLRELDLSSVDMSLVVPNSLMNLSSSLSSLILNSCRLQGEFPFSMRKFKHLQQLDLRYNNFSGSIPDDLGQLTELVSIYLSYN GYLSVEPSSFDNIIQNLTKLRNLRLGLVNMSLVTPNSLANLSSSLSDLGPWGCGLKGKFPGNIFLLPNLQVLDLTDNDDLTGSFPSFNASNIIRSLSLSH TAISVYLENDFFTNLKLLEVLALRQCNIIRSNLTLIGHLTELTSLNLIGNNLSGQIPSSFKNLVQLQSLYLGNNNFSGRIPEFLGNLTLLENLGLSNNQL SGPIPSQISTLSLRSFDLSKNNLHGPIPSSIFKQENLDVLSLASNNKLTGEISSSICKLKVLRLLDLSNNSLSGFIPQCLGNFSNSLSVLNLGKNNFQGT IFSPFSKGNNLGYLNLNGNELEGKIPSSIINCMMLQVLDLGDNKIEDTFPYFLETLPELYILALKSNKLHGFVNGPTTKNSFSKLRVFDISNNNLSGPLP IGYFNSFEAMMAYDQNPFYMMAYSIKVTWKGVEIEFEKIQSTLRILDLSNNSFTGEIPKEIGKLKAVRQLNLSHNSLTGHIQSSLGMFTNLESLDLSSNL LTGRIPVQLADLTFLAVLDLSHNRLEGPVPGGKQFNTFNASSFEGNLDLCGFPMPKECNNDEAPPLQPSNFHDGDDSKFFGEGFGWKAVAIGYGSGFVFG VTMGYVVFRTRKPAWFLKVVEDQWNLKARRTKKNARRNGARRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G013435 [exp]	0	1
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117300 [exp]	2.82	0.9033
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Potri.008G007600 [exp]	8.83	0.8394
					Potri.012G120860 [exp]	10.67	0.8947
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120000 [exp]	11.40	0.8910
AT5G11290			Plant protein of unknown funct...		Potri.003G208400 [exp]	12.04	0.8957
AT4G31980			unknown protein		Potri.003G206801 [exp]	12.60	0.9026
AT2G44930			Plant protein of unknown funct...		Potri.012G035100 [exp]	12.96	0.8938
					Potri.001G434600 [exp]	14.28	0.8107
AT4G31980			unknown protein		Potri.003G208750 [exp]	15.42	0.8792
AT4G31980			unknown protein		Potri.003G208700 [exp]	16.52	0.8794

Compare expression of checked genes

Potri.012G013435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.