Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01500 52 / 6e-09 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G68840 47 / 4e-07 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT1G13260 47 / 5e-07 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT4G21550 45 / 2e-06 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT1G25560 45 / 3e-06 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G34390 44 / 5e-06 ARF ARF22 auxin response factor 22 (.1) AT1G34310 44 / 8e-06 ARF ARF12 auxin response factor 12 (.1) AT3G25730 43 / 1e-05 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G01030 43 / 1e-05 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT3G61830 41 / 5e-05 ARF ARF18 auxin response factor 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G015650 [exp] 166 / 2e-54 AT1G13260 50 / 6e-08 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.015G015275 [exp] 164 / 9e-54 AT4G01500 44 / 4e-06 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G015501 [exp] 162 / 7e-53 AT1G13260 46 / 1e-06 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.012G013501 [exp] 160 / 2e-52 AT4G01500 48 / 3e-07 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G015800 [exp] 160 / 6e-52 AT1G13260 44 / 7e-06 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.015G014850 [exp] 159 / 7e-52 AT4G01500 45 / 3e-06 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.012G013167 [exp] 157 / 9e-51 AT1G43950 49 / 1e-07 auxin response factor 23 (.1) Potri.012G012950 [exp] 153 / 3e-49 AT1G35520 49 / 9e-08 auxin response factor 15 (.1) Potri.012G012850 [exp] 150 / 2e-48 AT4G01500 49 / 6e-08 NGATHA4, AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041487 [exp] 51 / 3e-08 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10034276 [exp] 47 / 6e-07 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10041340 [exp] 46 / 1e-06 AT3G61830 370 / 2e-122 auxin response factor 18 (.1) Lus10021707 [exp] 40 / 0.0001 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021326 [exp] 40 / 0.0001 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10035059 [exp] 40 / 0.0001 AT1G13260 250 / 2e-96 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10005930 [exp] 39 / 0.0005 AT5G62000 361 / 2e-112 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10012421 [exp] 39 / 0.0006 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10040906 [exp] 38 / 0.0008 AT5G62000 367 / 2e-114 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10024320 [exp] 38 / 0.0009 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G013700.1 pacid=42782886 polypeptide=Potri.012G013700.1.p locus=Potri.012G013700 ID=Potri.012G013700.1.v4.1 annot-version=v4.1 ATGGCAAGCTTCTCAAAGATACTCAGACCGACGGATATTTACAAGAGACTCTCAGTGCCGACCAAGTATCTCAAGTCTCTCCCATCTTTCGAAGGTGGTC ATGCTGTAGATTTTCAAGCAGTTGATGATAAGGGCCATGTTTGGACCTTCAAGTGCTCCGTTCGCAAGAAAGGGCGATACCCTAAACCAGTTCTCGCAAA GGGTTGGCTTCCTTTCGTTGCTAGCAAGAACCTTAAAGCTGGCGACAAGGTCAAGTTTTACAGGGAGAAAAACAAATCCGCTGCAAAACGTGTTTACAAG GTTCAGGTCGCAAAAGAAGTCAGGATATTTGGTGTTATCTTCGGCTATGCTCCGATATTCTAG
AA sequence Show only first row Show all	>Potri.012G013700.1 pacid=42782886 polypeptide=Potri.012G013700.1.p locus=Potri.012G013700 ID=Potri.012G013700.1.v4.1 annot-version=v4.1 MASFSKILRPTDIYKRLSVPTKYLKSLPSFEGGHAVDFQAVDDKGHVWTFKCSVRKKGRYPKPVLAKGWLPFVASKNLKAGDKVKFYREKNKSAAKRVYK VQVAKEVRIFGVIFGYAPIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013700 [exp]	0	1
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.012G012950 [exp]	1.00	0.9459
AT2G46620			P-loop containing nucleoside t...		Potri.002G175600 [exp]	2.23	0.9361
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Potri.013G127500 [exp]	2.44	0.9270
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.001G148900 [exp]	3.16	0.9395	Pt-BMY.1
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Potri.003G222501 [exp]	4.12	0.9142
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.011G158500 [exp]	5.09	0.9183
					Potri.012G053301 [exp]	5.65	0.9362
AT5G38710			Methylenetetrahydrofolate redu...		Potri.004G106400 [exp]	6.32	0.9234
					Potri.004G104600 [exp]	8.77	0.9263
AT5G49600			Protein of unknown function, D...		Potri.010G149100 [exp]	11.74	0.9053

Compare expression of checked genes

Potri.012G013700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.