Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53440 419 / 3e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014800 [exp] 1286 / 0 AT5G53440 438 / 2e-134 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005006 [exp] 620 / 0 AT5G53440 397 / 5e-119 unknown protein Lus10019025 [exp] 618 / 0 AT5G53440 400 / 3e-119 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G013800.1 pacid=42783380 polypeptide=Potri.012G013800.1.p locus=Potri.012G013800 ID=Potri.012G013800.1.v4.1 annot-version=v4.1 ATGCCGAGAAGCTCTCGACACAAATCGAGCAAGCATAGCTCGAGAGAGTATTCGGATTCGGAGAAAGATTCGAGCTTGAAAGAGAAGAAGGCGGCGAAAG AGGAGAGTGTCAGTAATAATAGCAGTGTTAGGGTTTCGACCGAGAAGAGGAAGTTAGATTTGAAGGAGAATAAGGAATCTTTAAATGGGGAATATGTAGA GGAATATTCTTCCTCTTCGTCAAAGAGGAGAAAAGAGAGAGTAGAGGAAAGTAATGATAGGTGGAATGGTGGAAAGGAGGAGAGGGGGGAGAAGAAGGGG AAGGAGAAAGGGGGCGAGGAGAAGTTGAAGAGTAAGAGGAGGGATGAGAGTGTGGAGAAGAAGAGTGAGGGAAGGCATAGGGAGAGTAGTAGAAAGGAGG AGAGGGAAAGGGAGAGGGTAAGGGAGAAGGAGAAGAAAGGAATGGAGGGTAGGAGTGAGGTTGAAGAGTATTCGCGTGGAGGAAAACAAATTACTGAAAA AACTGCAAATGATCAATTGCGAAGTCCTGAATCAGAGAACCGGTCTGATAGACGAATTAGGAGAAAGAAAGATGATTCTGCTGATGGGGATAAGCATCAT GATGATATTGGAGATGCTAATGGAAAACGATTATCCTCAAGGGAAGATGTTAAGGAAGAAAAACCGAAGGACGAGAAGCACAAGGATGATCGATATAGAG ACAAGTACCATGAGGTCGTGGACAGGGAAAATAGGCATGGAGATGATAAGCAAAGAGATGAGCGTGGTGCAAGAGATTATGTTAACAACAGGTCTGAAGA GAAGCACATAAGGGATGAGAAGGATGCTTCAGAAGTTCGGAAGAAATCTAAGCCACAAGACACTGATCGTGATCATGACCGTGAAAGAGAGCGTGACCAT GATCGTAATCGTGATAGGGATCGGGAGCGAGAACATGATCGAGACCGGGATCGTGATTGTGACCAAGATCATGATTGGGATTTGGATCGAAATCGGGACC AAGATAGGGAACGAGACCGTGACAGAGACCATGGCCGTAATCTTGACTATGATGGGTCACATATTGATGATTGTAGTGCCAGATACAAAGATAGCAGGGG AAGGAAAAGATCTCCTGAGGATCGTGATCACTATAATGATGCTAAATCCAAAGGTACAAAGGCACCTTATCCTGATGTGGAAAAGAAATCTTTGAGCAGT GGGAGAGTTGAGTCAGATGACAGGGGAAGATCTCAATCACGTCAAGCCCATCTAGACAATAATGTTAGCAGCAACAGGCGGAGGACTTCCCCGGACACCA GTTCACATGGAGCTGTTGAAGAACACAGGCATTTCAAAGCAGAAGATTTGAAGTACAGGGATGCTGTGACCAAACAGAGGTCGAAAGCAATTTCTTCAAG AGAGGCTGCTGATTTTTCAGCAACATCAGAGAGAGCTTCCAAGCATAGGTCATCTGATAAACCTATTAAAATGGATGATGGCCATGTAGGTGAGTTGTCA ATTGAGAGGTCTTCAAGTTCTAGAGCTTCACCCCGGGGCTTGGTTGACAGATCTCCTTCATCAAGCCTTGAGCACAGATATGCAAACAGAACTGGTGTCA GACGGAGTCTTGACATTGAAGAATCAGCGAGGAGGAGAAGTGGTTCCATCAGTGCTAGAAATTTGCCTTCTGCTGAAGACAGACTAGGTCGGGATTTACC GTTGGAGAAGCCTCTAGCAGATGATTCAACTCCAGCTGATTCATCCTTTTATAATAGAACTAATCAGAACAGTTCTTCTTTGATTCCTCCATCCATCTTC AGGGGTGGAGGTGGCAGCCCGTCTTTTATGGGTTCACTAGAAGAAGATAGTAGAGGTAACACCCGCTACAAAAGAGGCGGCGATCCCAGTCTGGGAAGAG GCCAAGGAAATGCTTGGAGAGGTACCCCAAACTGGTCTTCACCAATGCCAAATGGCTACATGCCTTTCCAACATGGACCAGCTCATGGAGGTTTTCAAGC AATGATGCCTCATTTTCCATCTCCTCCGCTGTTCAGTGCCAGGCCTTCAATGGAAATTAATCACTCTGGGATTCCTTACCATATACCTGATGCTGACAGG TTCTCTGGTCATTTGCGCCCACTTGGGTGGCATAATATGATGGATGGATCAGGACCTTCTCCCATGCATGGATGGGATGGAAATAATGGTGTGTTTAGGG ATGAAACACATGCATTTGGGCAAGAATGGGATCAGAATAGGCATCAGTTGAATGGTCAGGGATGGGAAACTGGCACGGACATGTGGAAAGCACAAAATGG TGATTTGAATATGGACTTGCCAGCAACTTCTGTGAAGGAGGATTTTCCAGTGCAGGCACCTCTGGAGAATGTTCTGGCTGGACAAGCAGGTCACCTGTTG CAAAATGAAAACATTCATCAAATGTTCCAAGCAGAAAATGTTGAAACAAAATTAGCTGTTGCTTCAGCAAAAGAACCTTCAAAATTTATGTCTAAAACTA CCCATGAGAAGATGCCTGATCCTTCTAGAACGCAAAGTAGTGATGACAGTTTTCATTTTGCCCGTGCTTATCTTTCTAAGCTGGACATTTCAACAGAACT TGCTAGTCCAGAGTTGTATAGCCAGTGTATGAGTTTGCTAAGCATGGAGCAGAGTGCAAATGCAGATGAAGATATTATAATGCTTGTAAATTTAAAGGAT GGTGCAAGAGCAGTACCGAAAAGTTCTGATTCCATTTTCAGTCTTTCACTTCTTCCTGCTGTAAAAGATTCTGTTTTTCAGAAAGCCATAGAATACTACA AGAAGCAGAGAGTAGGTTTGAGTGGCTTGCCAATTGTTAATGGTGGAAAAATAGATGCTATTTCAACGTCCAAAGTGAAGGATGAACCTATTAATGATGT GCACAAAGCAGAGGAGCTAGTTTTAAATCAGAATGAAGAAATGCCAGATGTTCCAGTATTGAGTTTAGATCAGAACAAAGCTGAAGAGGTTGCCATTGCT GATACCCGGGAGATATCGGAAGAGCTTGTTTCCGCTCCTAGCCTGAAGGAACATGCTCATGCTTGCACATCCTCTCAGGAATTGCCTGATCAAGCTCTCG TTCAACAAGATTGTGTGGAAAAGCCCGTGGAAATTTATAGTGGTAATAAGATTGATGAGGTGCCATCCGAACCAGTCAATTCAGGTGTGGCGGGCAGCCT CCCAAACCCTGATTATGCACCTGAAGCTGATACCATTTCACCTGCTAAAGGTTTAGATGATAATTCTTTGCAATGTGCTGAAGAAGGGCAGGGGTCTGGT GATACAATGTGTGGTCCTTTATTTTTTTCGGATGATTCTCCCAAGGCATCCGGGGCTTTGATGCCTGGGTCAAATGAGTCTGAGTCGGTAATTTTAAGTC GGATACATCATTCTCCTGAAAGTACACGTTGA
AA sequence Show only first row Show all	>Potri.012G013800.1 pacid=42783380 polypeptide=Potri.012G013800.1.p locus=Potri.012G013800 ID=Potri.012G013800.1.v4.1 annot-version=v4.1 MPRSSRHKSSKHSSREYSDSEKDSSLKEKKAAKEESVSNNSSVRVSTEKRKLDLKENKESLNGEYVEEYSSSSSKRRKERVEESNDRWNGGKEERGEKKG KEKGGEEKLKSKRRDESVEKKSEGRHRESSRKEERERERVREKEKKGMEGRSEVEEYSRGGKQITEKTANDQLRSPESENRSDRRIRRKKDDSADGDKHH DDIGDANGKRLSSREDVKEEKPKDEKHKDDRYRDKYHEVVDRENRHGDDKQRDERGARDYVNNRSEEKHIRDEKDASEVRKKSKPQDTDRDHDRERERDH DRNRDRDREREHDRDRDRDCDQDHDWDLDRNRDQDRERDRDRDHGRNLDYDGSHIDDCSARYKDSRGRKRSPEDRDHYNDAKSKGTKAPYPDVEKKSLSS GRVESDDRGRSQSRQAHLDNNVSSNRRRTSPDTSSHGAVEEHRHFKAEDLKYRDAVTKQRSKAISSREAADFSATSERASKHRSSDKPIKMDDGHVGELS IERSSSSRASPRGLVDRSPSSSLEHRYANRTGVRRSLDIEESARRRSGSISARNLPSAEDRLGRDLPLEKPLADDSTPADSSFYNRTNQNSSSLIPPSIF RGGGGSPSFMGSLEEDSRGNTRYKRGGDPSLGRGQGNAWRGTPNWSSPMPNGYMPFQHGPAHGGFQAMMPHFPSPPLFSARPSMEINHSGIPYHIPDADR FSGHLRPLGWHNMMDGSGPSPMHGWDGNNGVFRDETHAFGQEWDQNRHQLNGQGWETGTDMWKAQNGDLNMDLPATSVKEDFPVQAPLENVLAGQAGHLL QNENIHQMFQAENVETKLAVASAKEPSKFMSKTTHEKMPDPSRTQSSDDSFHFARAYLSKLDISTELASPELYSQCMSLLSMEQSANADEDIIMLVNLKD GARAVPKSSDSIFSLSLLPAVKDSVFQKAIEYYKKQRVGLSGLPIVNGGKIDAISTSKVKDEPINDVHKAEELVLNQNEEMPDVPVLSLDQNKAEEVAIA DTREISEELVSAPSLKEHAHACTSSQELPDQALVQQDCVEKPVEIYSGNKIDEVPSEPVNSGVAGSLPNPDYAPEADTISPAKGLDDNSLQCAEEGQGSG DTMCGPLFFSDDSPKASGALMPGSNESESVILSRIHHSPESTR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53440			unknown protein		Potri.012G013800 [exp]	0	1
AT2G25730			unknown protein		Potri.006G244900 [exp]	1.73	0.9249
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.017G041100 [exp]	2.23	0.9377
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	3.74	0.9307	SDG904
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.004G040000 [exp]	4.69	0.8785
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	5.65	0.8913	CHR928,PIE1.4
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	6.32	0.9124
AT5G53440			unknown protein		Potri.015G014800 [exp]	6.48	0.9054
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.001G253400 [exp]	7.93	0.8908
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	8.36	0.8975
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.010G087700 [exp]	10.95	0.8834

Compare expression of checked genes

Potri.012G013800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.