Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49220 789 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 781 / 0 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G14310 461 / 2e-156 ATPME3 pectin methylesterase 3 (.1) AT1G53830 452 / 7e-153 ATPME2 pectin methylesterase 2 (.1) AT3G43270 444 / 2e-150 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 442 / 1e-149 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT1G11580 439 / 2e-148 ATPMEPCRA methylesterase PCR A (.1) AT3G05620 426 / 3e-143 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 426 / 3e-143 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G43050 421 / 1e-141 ATPMEPCRD, PME16 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013700 [exp] 1013 / 0 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 493 / 4e-169 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022700 [exp] 471 / 5e-161 AT3G05620 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 465 / 6e-159 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 467 / 1e-158 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.011G025400 [exp] 453 / 8e-154 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.010G109400 [exp] 451 / 2e-153 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 452 / 3e-153 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.015G127700 [exp] 448 / 2e-152 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018103 [exp] 801 / 0 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10022412 [exp] 769 / 0 AT3G49220 761 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 451 / 4e-153 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 449 / 3e-152 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 449 / 3e-152 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 446 / 3e-152 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 447 / 3e-151 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 427 / 9e-144 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 426 / 8e-143 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10027202 [exp] 425 / 1e-142 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.012G014500.1 pacid=42784081 polypeptide=Potri.012G014500.1.p locus=Potri.012G014500 ID=Potri.012G014500.1.v4.1 annot-version=v4.1 ATGGGTTACGGTAGACTCGGGCGAAAGGAATCCGACCCGGGAGAAGGGTCCAGTAATTCATTTACTATCAACCAACCACAACACGCCACGTCACAGGTTT CCCCGACGAGAAAAAAGAAAATCATCTTCCTTACCATCTTCTCTGTCGTATTGATAGCCGCCTCCGCCGCCTCCGCGGCGATCCTCCTCGGGGTCCGAGA TAAGGCTTCTGGTCAATCCGACCCGAACAGTCTTACTCACCGGAAACCAACCCAGGCTATCTCCAAGGCATGCAGCAAGACTCGGTTCCCGGCCCTCTGC GTCAGCTCGCTCCTCGACTTCCCTGGCTCAATGACTGCGTCCGAGTCAGACTTGGTTCACATTTCCTTCAACATGACTCTTCTGCACTTGGATAAAGCTC TATATCTCTCCTCGGGAATCTCCTATGTCAACATGGAGACACATGAACGGTCAGCATTTGATGACTGCCTCGAGCTACTGGAAGACTCCATAGACGCCCT CACTCGGTCCCTCTCCACCGTCTCACCATCCTCCGGCGGTGGTGGATCGCCGGAGGACGTAGTGACGTGGCTGAGCGCAGCGTTGACGAACCAGGACACA TGCAGTGAAGGATTCGAAGGAGTTAACGGAACTGTTAAAGATCAGATGACAGAGAAGTTGAAGGATTTGACGGAGCTGGTCAGTAACTGTTTGGCGATAT TTTCCGCGACTAATGGAGGCGATTTCTCTGGAGTGCCGATACAGAATAAGAGGAGATTAATGACAGAGGATGGGGACATATCGGAAGAGGACAATTTCCC GAGTTGGTTAGGGAGGAGAGAGAGGAGACTATTAGGCCTGCCTGTATCGGCCATACAAGCCGATATTATCGTATCGGGAGATGGGAGCGGAACGTTCAAG ACAATATCGGAGGCGATAAAAAAGGCGCCTGAGCACAGTAATCGGCGGACGATAATTTATGTGAGGGCAGGAAGATATGTAGAGGATAACTTGAAAGTTG GGAGGAAGAAATGGAATTTGATGTTCATCGGAGATGGGATGGGAAAGACAATAATTACAGGAAGCAGAAGTGTTTTTAACCACATCACCACATTCCACAC AGCATCCTTTGCTGCAACAGGAGCTGGTTTTATTGCTCGTGACATGACATTTGAGAACTGGGCTGGTCCAGCCAAGCATCAAGCTGTGGCTCTTCGAGTT GGTGCAGACCATGCTGTGGTCTATAGGTGCAGCATCATTGGTTACCAAGACACCCTCTACGTGCACTCAAATCGCCAATTCTACAGGGAATGTGACATTT ATGGGACTGTAGATTTCATATTCGGCAATGCTGCAGTTGTGTTACAAAACTGTAGCATTTATGCCCGTAAGCCAATGGCCTCCCAGAAAAACACCATCAC TGCCCAGAATCGCAAAGACCCTAATCAAAATACAGGCATATCAATCCATGCTTGCAAGATCCTTGCCGCGTCGGACCTCGCACCGTCGAAAGGCACCTTC CCGACATATCTCGGCCGTCCATGGAAGCTGTACTCTAGAACTGTGTACATGTTATCATTCATGGGTGATCACATTCATCCAAGAGGGTGGCTCGAGTGGG ACGCATCATTTGCACTGGACACCTTATACTATGGTGAATACATGAATTATGGACCTGGTGCGGCGGTCGGGCAAAGGGTAAAATGGCCCGGGTATCGGGT CATCACATCGACCGTCGAGGCAAATAAATTCACTGTGGCACAGTTTATCTATGGTTCATCTTGGTTACCTTCTACAGGGGTGGCATTTTTAGCTGGACTT TCAGTTTAA
AA sequence Show only first row Show all	>Potri.012G014500.1 pacid=42784081 polypeptide=Potri.012G014500.1.p locus=Potri.012G014500 ID=Potri.012G014500.1.v4.1 annot-version=v4.1 MGYGRLGRKESDPGEGSSNSFTINQPQHATSQVSPTRKKKIIFLTIFSVVLIAASAASAAILLGVRDKASGQSDPNSLTHRKPTQAISKACSKTRFPALC VSSLLDFPGSMTASESDLVHISFNMTLLHLDKALYLSSGISYVNMETHERSAFDDCLELLEDSIDALTRSLSTVSPSSGGGGSPEDVVTWLSAALTNQDT CSEGFEGVNGTVKDQMTEKLKDLTELVSNCLAIFSATNGGDFSGVPIQNKRRLMTEDGDISEEDNFPSWLGRRERRLLGLPVSAIQADIIVSGDGSGTFK TISEAIKKAPEHSNRRTIIYVRAGRYVEDNLKVGRKKWNLMFIGDGMGKTIITGSRSVFNHITTFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRV GADHAVVYRCSIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQNCSIYARKPMASQKNTITAQNRKDPNQNTGISIHACKILAASDLAPSKGTF PTYLGRPWKLYSRTVYMLSFMGDHIHPRGWLEWDASFALDTLYYGEYMNYGPGAAVGQRVKWPGYRVITSTVEANKFTVAQFIYGSSWLPSTGVAFLAGL SV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49220			Plant invertase/pectin methyle...		Potri.012G014500 [exp]	0	1
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.002G016300 [exp]	3.74	0.6322	Pt-SMT1.1
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.009G079500 [exp]	8.48	0.5636
					Potri.005G006200 [exp]	11.53	0.5516
AT1G22610			C2 calcium/lipid-binding plant...		Potri.019G080000 [exp]	11.61	0.5955
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.016G066500 [exp]	25.74	0.5617
					Potri.005G006000 [exp]	41.42	0.5183
AT4G26490			Late embryogenesis abundant (L...		Potri.001G468400 [exp]	44.82	0.5093
AT5G18600			Thioredoxin superfamily protei...		Potri.010G021800 [exp]	52.09	0.5137
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Potri.011G135900 [exp]	88.26	0.5179	GPT.1
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241500 [exp]	91.32	0.5266

Compare expression of checked genes

Potri.012G014500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.