Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24240 768 / 0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT2G46500 758 / 0 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT1G64460 469 / 8e-164 Protein kinase superfamily protein (.1) AT2G03890 222 / 3e-64 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G26270 220 / 1e-63 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT1G13640 220 / 1e-63 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G40850 212 / 4e-61 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT1G64470 197 / 1e-59 Ubiquitin-like superfamily protein (.1) AT3G56600 203 / 3e-58 Protein kinase superfamily protein (.1.2) AT1G27570 107 / 3e-24 phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013600 [exp] 1019 / 0 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.014G099000 [exp] 781 / 0 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.001G090300 [exp] 761 / 0 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.008G112200 [exp] 228 / 3e-66 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.010G137400 [exp] 226 / 7e-66 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 216 / 2e-62 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.017G101500 [exp] 203 / 1e-57 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.002G171400 [exp] 95 / 2e-23 AT1G64460 86 / 6e-22 Protein kinase superfamily protein (.1) Potri.011G026600 [exp] 80 / 8e-17 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022411 [exp] 866 / 0 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10018104 [exp] 817 / 0 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10001817 [exp] 700 / 0 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10003190 [exp] 639 / 0 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10030251 [exp] 494 / 2e-173 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10004005 [exp] 491 / 2e-172 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10019197 [exp] 226 / 2e-65 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 224 / 1e-64 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 211 / 3e-60 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10018367 [exp] 80 / 9e-17 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Potri.012G014600.1 pacid=42783723 polypeptide=Potri.012G014600.1.p locus=Potri.012G014600 ID=Potri.012G014600.1.v4.1 annot-version=v4.1 ATGTCGGTGGCTAGTGTAGCTCTTAGTCCTGTGTGTGGAGAGTCTTTAGATTCTCGTTGCAATTTCCCTTGGCTGTGTGGTCTGCGCTCTAGTTACTCTA TTGTAATATATCTTTCTTTTGGGGGATCAGTCATTCCAATGCGAGTTATGGAGTCGGATTCAATTGCTTCGGTGAAGCTGAGGATTCAAGCTTCCGAAGG TTTTTTTGTGAAGAAGCAAAAATTGGTTTTTGAAGGGAGGGAACTAGCACGGAACAATTCGCAAGTAAGAGATTATGGTGTTGCGAATGGAAAAGTTCTG CATTTGGTGCTCAGGCTTTATGATCTCCAAACTATAACTGTCAGGACTGTTTGTGGCAAAGTGTGTGACTTTCATGTTGATAGGGGTAGAAGTGTAGGCT ATGTTAAGAAGCAGATAGCTAGGAAAGGGAAATGTTTTGAACTTGTTGAACAAGAACTGATATGTGATGGTGAGGAGCTCGAAGACCAGAGGCTCATTAC TGATATTTGCAAAAGTAATGATTCTGTGATTCATTTGCTCATTCGGAAATCTGCCAAAGTGAGGGTAAAACCTGTTGAGAAAGATTTTGAATTGTCTGTT GAGGCATTAGATTTGAATGATAAGGAAGCTGGCAGTGTAGGAGAGCACAAACAGGGTGCTTTATCTATGGGATATAGGGGTATAGAGAGGAAACCACTAT TACAACAGTTCTTACTGGAACCACTAATTGTTAATTCCAAAATTCAACTGCCATTGGTTATCAGAGAGCTAATCAAGTCAACTTTAAATGGGCTGGAGAG GGGCAATGAACCAATTCGATCTTCTGAGGGATCTGGAGGAGCTTATTTCATGCAAGATTCATCTGGTCTGAAATATGTTTCTGTCTTTAAGCCAATTGAT GAGGAGCCAATGGCTGTAAATAATCCTCAGGGGCTACCCTTGTCAGTTGATGGTGAAGGATTGAAGAAAGGCACTAGAGTAGGACAGGGTGCATTGCGGG AAGTTGCAGCTTACATTCTGGATCATCCAAAGAGTGGACCACGCTCATTTTCTGGTGAGGAGAGAGGCTTTGCTGGGGTTCCACCCACAGCAATGGTCAA GTGCCTCCACAGAGGATTCAATCATCCTGATGGTTATGAATTTGATTCCAAGAATATCAAAATTGGTTCATTGCAGATGTTCATAGAGAATAATGGAAAT TGTGAAGATATGGGTCCTTGTGCTTTCCCTGTAGCTGAGGTGCACAAAATCTCAGTGTTGGATATTAGATTGGCAAATGCAGATAGGCATGCTGGGAACA TATTGGTCAGTAAAGATGGTGAGCGTGGCAAGATTGTGCTTATTCCAATTGATCATGGTTACTGCTTGCCTACAAATTTTGAGGATTGCACCTTTGACTG GCTTTACTGGCCTCAAGCTCAACAGCCTTACTCCCCTGACACTGTTGAGTACATCAAAGCTCTGGATGCTGAGCAGGACATCGCACTTCTGAAGTTTCAT GGGTGGGATATACCACCTGAGTGTGCTCGCACCCTTCGCATTTCCACTATGCTTCTGAAGAAAGGAGTAGAGAGAGGTCTTACTCCCTTCGCCATTGGAA GCCTCATGTGCAGGGAAACAGTGAAGAAGGAATCCGTGATTGAGCAGATTGTTCAAGAAGCTCATGATGCTGTTCTCCCAGGAAGCAGTGAGGCTGCCTT TCTTGAAGCTGTATCACTAATCATGGATCGTCGTCTCGATAAGCTGTCCTCGTGA
AA sequence Show only first row Show all	>Potri.012G014600.1 pacid=42783723 polypeptide=Potri.012G014600.1.p locus=Potri.012G014600 ID=Potri.012G014600.1.v4.1 annot-version=v4.1 MSVASVALSPVCGESLDSRCNFPWLCGLRSSYSIVIYLSFGGSVIPMRVMESDSIASVKLRIQASEGFFVKKQKLVFEGRELARNNSQVRDYGVANGKVL HLVLRLYDLQTITVRTVCGKVCDFHVDRGRSVGYVKKQIARKGKCFELVEQELICDGEELEDQRLITDICKSNDSVIHLLIRKSAKVRVKPVEKDFELSV EALDLNDKEAGSVGEHKQGALSMGYRGIERKPLLQQFLLEPLIVNSKIQLPLVIRELIKSTLNGLERGNEPIRSSEGSGGAYFMQDSSGLKYVSVFKPID EEPMAVNNPQGLPLSVDGEGLKKGTRVGQGALREVAAYILDHPKSGPRSFSGEERGFAGVPPTAMVKCLHRGFNHPDGYEFDSKNIKIGSLQMFIENNGN CEDMGPCAFPVAEVHKISVLDIRLANADRHAGNILVSKDGERGKIVLIPIDHGYCLPTNFEDCTFDWLYWPQAQQPYSPDTVEYIKALDAEQDIALLKFH GWDIPPECARTLRISTMLLKKGVERGLTPFAIGSLMCRETVKKESVIEQIVQEAHDAVLPGSSEAAFLEAVSLIMDRRLDKLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.012G014600 [exp]	0	1
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	2.64	0.8929
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.001G466066 [exp]	2.82	0.8734
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G021250 [exp]	9.00	0.8097
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.001G434400 [exp]	11.48	0.7646
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.002G032700 [exp]	14.00	0.8555
AT3G24100			Uncharacterised protein family...		Potri.014G056600 [exp]	16.94	0.8181
AT5G63830			HIT-type Zinc finger family pr...		Potri.003G145100 [exp]	17.49	0.8657
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.014G106200 [exp]	19.59	0.7843	Pt-MTP1.1
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Potri.014G164900 [exp]	22.73	0.7902
AT1G31240			Bromodomain transcription fact...		Potri.015G118200 [exp]	27.74	0.7458

Compare expression of checked genes

Potri.012G014600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.