Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24260 1027 / 0 prolyl oligopeptidase family protein (.1) AT2G47390 56 / 9e-08 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013400 [exp] 1458 / 0 AT5G24260 968 / 0.0 prolyl oligopeptidase family protein (.1) Potri.014G120600 [exp] 60 / 7e-09 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.002G196000 [exp] 59 / 2e-08 AT2G47390 1394 / 0.0 Prolyl oligopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018107 [exp] 1228 / 0 AT5G24260 1031 / 0.0 prolyl oligopeptidase family protein (.1) Lus10022408 [exp] 1219 / 0 AT5G24260 1037 / 0.0 prolyl oligopeptidase family protein (.1) Lus10010007 [exp] 62 / 1e-09 AT2G47390 1458 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10039405 [exp] 55 / 2e-07 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10025026 [exp] 50 / 9e-06 AT2G47390 1339 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015363 [exp] 44 / 0.0007 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10025027 [exp] 44 / 0.0008 AT2G47390 1330 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00930 [poplar] [flax] DPPIV_N Dipeptidyl peptidase IV (DPP IV) N-terminal region CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.012G014900.2 pacid=42783926 polypeptide=Potri.012G014900.2.p locus=Potri.012G014900 ID=Potri.012G014900.2.v4.1 annot-version=v4.1 ATGCAATCAGTTGATGAGAACGAGAGCCAGAACAAGAAATTAAGGATATTGAGATCATTAAATAACGATATGCCTCTGACTGATAACACCATCCCACAAA ATGTTGAGGACAGTATTCTTTTTCCTATTGAAGAGATAGTGCAATCCCCGTTGCCTGGATATGAGGCGCCAACTTCGATAGGTTTCAGTGCTGATGATAG TTTACTTACTTACTTATTTAGTCCTGATCACACCTTGAGTAGGAAGGTTTTTGCTTTTGATCTCAAGAGTGGCAAGCAAGAATTGTTTTTTGGCCCCCCT GATGGTGGACTTGATGAGAGTAATATATCACCGGAAGAGAAGTTGCGAAGGGAGAGGTTAAGGCAACGTGGGCTGGGAGTGACATGTTATGAATGGGTGA AGACAGGTTCGAAGAAGAAAGCAATTATGGTGCCACTGCCTGCAGGGCTTTATTTACAGGAACTGCACTCTTCAAAACCAGAGCTCAAGCTTCCCAGCTC TGCATTGTCCCCTGTTATCGATCCACATGTCTCTCCTGATGGTACCATGCTTGCTTATATAAGGGACAGTGAGCTGCATGTTCTAAATTTATTGTACAAC GAGTCCAAACAATTAACACATGGTGCTCAGGGAAATACAGTGACTCATGGCCTTGCTGAATATATAGCTCAGGAGGAGATGGACCGGAAGAATGGTTACT GGTGGTCACTTGACAGCAAATTCATTGCATTTACACAAGTTGATTCATCTGAGATACCTCTTTTTAGAATTATGCACCAAGGCAAAAGCTCTGTAGGTTC AGAAGCACAGGAAGATCATCCTTATCCCTTTGCTGGAGCTTCAAATGTCAAAGTTCGCCTTGGGGTAGTTTCTGTTCATGGTGATTCTATAACTTGGATG GATCTTCTATGTGGAGGAACAAAAGAACCAGATAATGAGGATGAATATTTGGCCCGAGTCAATTGGATGCATGGAAATGTTCTCATAGCTCAAGTTTTGA ACAGGTCTCATTCAAAATTAAAACTTCTTAAGTTTGATATTAAGACGGGGAAAAAAGAGGTGTTATATGCAGAAGAACAACTCCCATGGATTAATTTACA TGACTGCTTCACTCCTTTGGACAAAGGAATCACTAAATATTCTGGAGGATTCATTTGGGCGAGTGAAAAGTCAGGATTTAGGCATTTGTGTGTGCATGAT GCCAATGGGACATGCTTAGGACCAATTACTGAAGGTGAATGGATGGTTGAGCAAATTGCCGGTGTAAATGAGGCTGCAGGGATCATATATTTTACTGCAA CTCTAGATGGGCCTTTGGAATCACATCTTTACCGTGCTAAACTGTATCCAATTGAAAACAATCCCTTGCAGGCTCCGGTGAGATTAACAAATGGTAAAGG GAAACACTCGGTTGTCCTTGATCACCACTTGCAGAATTTTGTTGATATCCATGATTCCCTTGATTCTCCCCCAAGAGTTTCTCTCTGCTCCCTGTTTGAT GGAAGAGAAATTATGCCTCTGTTTGAGCAGTCTTTTACCATTCCAAGATATAAAAGGCTGGAACTTGAGCCTCCAAAGATAGTTCAGATACAAGCAAATG ACGGGACCATATTGTATGGGGCTTTATATGACCCTGACCCTACAAGATTTGGACCACCACCATACAAAACCGTGATCAGTGTGTATGGAGGCCCCGGTGT ACAGTATGTATGTGATTCTTGGATAGGTACAGCTGACATGAGAGCTCAATATCTTCGGAGCCAAGGCATCTTAGTGTGGAAGTTGGATAATAGAGGAAGT GCTCGCCGTGGGCTAAAGTTTGAAGGTGCTCTGAAAGGAAATCCTGGCCGCTTTGATGCAGAGGATCAGCTTACAGGAGCAGAATGGCTCATTAAACAAG GATTGGCAAAAGCTGGCCACATTGGGTTGTGTGGATGGAGTTATGGTGGATATATGTCAGCTGTGATCTTGGCAAGGTTCCCTGATGTATTCTGTTGTGC TGTCTCTGGTGCACCTGTAACCTCCTGGGATGGATATGACACATTTTACACTGAGAAGTACATGGGATTGCCTTCTGATAATCCAAAGGGCTACGAGTAC GGCTCTGTGATGCATCATGTGCACAAGTTAAAAGGGAGGTTGTTGCTGGTGCATGGCATGATTGATGAAAATGTGCATTTTAGACACACTGCAAGGCTTG TCAATGCACTCGTGGCAGCTGGAAAACCCTATGAACTATTAATTTTCCCTGATGAACGACACATGCCCCGTCGGCATAATGACCGAATTTACATGGAAGA GAGAATTTGGGAGTTCTTCCAGAGAAGTTTATGA
AA sequence Show only first row Show all	>Potri.012G014900.2 pacid=42783926 polypeptide=Potri.012G014900.2.p locus=Potri.012G014900 ID=Potri.012G014900.2.v4.1 annot-version=v4.1 MQSVDENESQNKKLRILRSLNNDMPLTDNTIPQNVEDSILFPIEEIVQSPLPGYEAPTSIGFSADDSLLTYLFSPDHTLSRKVFAFDLKSGKQELFFGPP DGGLDESNISPEEKLRRERLRQRGLGVTCYEWVKTGSKKKAIMVPLPAGLYLQELHSSKPELKLPSSALSPVIDPHVSPDGTMLAYIRDSELHVLNLLYN ESKQLTHGAQGNTVTHGLAEYIAQEEMDRKNGYWWSLDSKFIAFTQVDSSEIPLFRIMHQGKSSVGSEAQEDHPYPFAGASNVKVRLGVVSVHGDSITWM DLLCGGTKEPDNEDEYLARVNWMHGNVLIAQVLNRSHSKLKLLKFDIKTGKKEVLYAEEQLPWINLHDCFTPLDKGITKYSGGFIWASEKSGFRHLCVHD ANGTCLGPITEGEWMVEQIAGVNEAAGIIYFTATLDGPLESHLYRAKLYPIENNPLQAPVRLTNGKGKHSVVLDHHLQNFVDIHDSLDSPPRVSLCSLFD GREIMPLFEQSFTIPRYKRLELEPPKIVQIQANDGTILYGALYDPDPTRFGPPPYKTVISVYGGPGVQYVCDSWIGTADMRAQYLRSQGILVWKLDNRGS ARRGLKFEGALKGNPGRFDAEDQLTGAEWLIKQGLAKAGHIGLCGWSYGGYMSAVILARFPDVFCCAVSGAPVTSWDGYDTFYTEKYMGLPSDNPKGYEY GSVMHHVHKLKGRLLLVHGMIDENVHFRHTARLVNALVAAGKPYELLIFPDERHMPRRHNDRIYMEERIWEFFQRSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24260			prolyl oligopeptidase family p...		Potri.012G014900 [exp]	0	1
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.002G154400 [exp]	4.47	0.6728
AT5G13560			unknown protein		Potri.008G048100 [exp]	21.58	0.5528
AT3G26100			Regulator of chromosome conden...		Potri.015G009400 [exp]	72.86	0.5908
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.019G025600 [exp]	78.33	0.6087	SEC.2
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Potri.009G026700 [exp]	100.15	0.5952
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	116.46	0.5704
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.017G148800 [exp]	128.96	0.5807
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Potri.010G059000 [exp]	150.19	0.5834	Pt-GCS1.3
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.003G111100 [exp]	159.27	0.5637
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.002G138400 [exp]	199.38	0.5692	RAB1.3

Compare expression of checked genes

Potri.012G014900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.