Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60490 179 / 1e-55 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G03170 173 / 2e-53 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT2G20520 110 / 4e-29 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT5G44130 110 / 4e-29 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 105 / 5e-27 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G04780 86 / 2e-19 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G46550 64 / 2e-11 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT3G60900 60 / 4e-10 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 57 / 4e-09 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT4G12730 52 / 2e-07 FLA2 FASCICLIN-like arabinogalactan 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014966 [exp] 356 / 8e-125 AT5G60490 179 / 1e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G013300 [exp] 350 / 2e-122 AT5G60490 176 / 3e-54 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G129400 [exp] 236 / 8e-78 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 234 / 3e-77 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.004G210600 [exp] 215 / 2e-69 AT5G60490 188 / 5e-59 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G014200 [exp] 207 / 2e-66 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 206 / 6e-66 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.013G151366 [exp] 205 / 3e-65 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151500 [exp] 203 / 7e-65 AT5G60490 167 / 4e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036114 [exp] 249 / 1e-82 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002978 [exp] 201 / 3e-64 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 200 / 1e-63 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 188 / 6e-59 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10036113 [exp] 187 / 4e-58 AT5G03170 173 / 6e-53 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036112 [exp] 179 / 2e-55 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002984 [exp] 168 / 5e-51 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10019929 [exp] 167 / 5e-51 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 166 / 1e-50 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036115 [exp] 157 / 6e-47 AT5G03170 151 / 4e-45 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.012G015032.1 pacid=42782536 polypeptide=Potri.012G015032.1.p locus=Potri.012G015032 ID=Potri.012G015032.1.v4.1 annot-version=v4.1 ATGAAGCAACAAATTTCCCTCTTCTCATTTTCACTTGTCCTTCTCTTCCTCCACTGCACCCAAACTCTATCCCAGTCTCCTACTTCAGCACCAGCAAAAG CACCTACTGCAGCCTCTGCACCTCCACCAGCTGCAACCTCGTCTGCACAGGCCTCGCCGCCCGTTATGGTTCCTGTACAAGTTTCGAAAGGTCCTGTCAA TGTCATTAAAATCCTTCAGAAGGCTGGCGGCTTTGCGGTCTTTATCCGCCTTATAAAATCCACTCAAGAGGACATCCAAGTATTCTCCCAGCTCAATGAC TCGAGAGATGGCGTCACCATCTTTGCCCCAACCGATGGGGCCTTTTCAGCCATTATCAAATCAGGTGTTCTTAACTCCCTAAGTGATCATCAGAAGATTG AGTTGGTGCAGTTTCATATTATACCAAGAATTCTTACAACTGCCAATTTTCAAACTGTCAGTAACCCTATAACGACACTGGCAGGATCTGGTAGTCGTTT CGCTCTTAATGTGATAACCACAGAAAATATGGTCAATGTAACTTCAGGACTTACCAATACAAGCGTATCGGCAATTGTATACACTGATAGCCAGCTTGCT ATCTATCAGGTCGACAAGGTGCTACTTCCTTTGGATATTTTTGCCCCTAAACCTCTTGCTCCTGCTCCAGCACCACCAAAGCCTAAAAAGGATGATGGCG CAGAGAGTCCTCTGGTTCCTGAGGATACTTCCAGTGCTGTAAGCTGCATCCCGCTTAACTCCCTGATCATCTTTGGAGCTGGTATGGTTGCTGCAGTTTT TACTTTGTGA
AA sequence Show only first row Show all	>Potri.012G015032.1 pacid=42782536 polypeptide=Potri.012G015032.1.p locus=Potri.012G015032 ID=Potri.012G015032.1.v4.1 annot-version=v4.1 MKQQISLFSFSLVLLFLHCTQTLSQSPTSAPAKAPTAASAPPPAATSSAQASPPVMVPVQVSKGPVNVIKILQKAGGFAVFIRLIKSTQEDIQVFSQLND SRDGVTIFAPTDGAFSAIIKSGVLNSLSDHQKIELVQFHIIPRILTTANFQTVSNPITTLAGSGSRFALNVITTENMVNVTSGLTNTSVSAIVYTDSQLA IYQVDKVLLPLDIFAPKPLAPAPAPPKPKKDDGAESPLVPEDTSSAVSCIPLNSLIIFGAGMVAAVFTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G015032 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.004G117200 [exp]	2.44	0.9802
AT1G21070			Nucleotide-sugar transporter f...		Potri.005G260300 [exp]	2.64	0.9666
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012200 [exp]	3.00	0.9795	FLA14.12
AT4G17920			RING/U-box superfamily protein...		Potri.003G093500 [exp]	5.83	0.9372
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151432 [exp]	5.91	0.9732
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012100 [exp]	6.00	0.9691	PtrFLA14-9,FLA14.9
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.001G109300 [exp]	6.32	0.9651
AT1G28240			Protein of unknown function (D...		Potri.004G044100 [exp]	8.36	0.9547
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120900 [exp]	8.48	0.9583	Pt-FLA14.3
AT3G47690		ATEB1A, ATEB1H2	ATEB1-HOMOLOG2, ARABIDOPSIS TH...		Potri.012G069400 [exp]	9.16	0.9459	Pt-ATEB1.3

Compare expression of checked genes

Potri.012G015032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.