Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24270 333 / 2e-117 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G17615 297 / 3e-103 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 295 / 2e-102 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT1G64480 280 / 9e-97 CBL8 calcineurin B-like protein 8 (.1) AT5G55990 280 / 3e-96 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT4G26570 276 / 5e-95 ATCBL3 calcineurin B-like 3 (.1.2) AT4G33000 268 / 2e-91 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT4G16350 224 / 3e-74 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G01420 209 / 7e-69 CBL5 calcineurin B-like protein 5 (.1) AT4G26560 194 / 6e-63 CBL7 calcineurin B-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013100 [exp] 409 / 9e-148 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 347 / 7e-123 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.001G090200 [exp] 312 / 2e-109 AT1G64480 280 / 2e-96 calcineurin B-like protein 8 (.1) Potri.003G084200 [exp] 287 / 1e-99 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.001G150200 [exp] 284 / 3e-98 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.016G003500 [exp] 282 / 3e-97 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.006G002900 [exp] 281 / 8e-97 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.001G371700 [exp] 280 / 1e-96 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 276 / 7e-95 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022407 [exp] 388 / 3e-139 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 385 / 7e-138 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10011028 [exp] 290 / 2e-100 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10023069 [exp] 284 / 4e-98 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10001816 [exp] 284 / 4e-98 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10030252 [exp] 281 / 4e-97 AT5G24270 269 / 4e-92 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10003191 [exp] 280 / 2e-96 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10032400 [exp] 283 / 3e-95 AT1G64480 263 / 3e-87 calcineurin B-like protein 8 (.1) Lus10015630 [exp] 263 / 3e-89 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10037648 [exp] 257 / 6e-87 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.012G015100.4 pacid=42783133 polypeptide=Potri.012G015100.4.p locus=Potri.012G015100 ID=Potri.012G015100.4.v4.1 annot-version=v4.1 ATGGGTTGCTACCATTCAAAGAGAACTAAAGAGACACCGGGGTACGAGGAGCCAACAGTACTTGCTGCTGAAACACCCTTTACTGTTAGCGAAGTAGAGG CTTTATACGAACTCTTTAAGAAATTAAGCAGTTCAGTCATTGATGATGGGCTTATTCACAAGGAAGAACTTCAGCTTGCACTCTTCAGGAACAAAAACAG GAGGAACCTTTTCGCAGACAGGATTTTTGATTTATTTGATGTCAAGCGCAATGGAGTAATTGAGTTTGGAGAATTTGTTCGATCTTTGGGTGTCTTTCAT CCAAATGCACCAGTTGAAGACAAGATCCATTTTACTTTCAGATTATATGATTTAAGGCAAACTGGTTTCATTGAACGAGAGGAGTTGAAGGAGATGGTAT TGGCAATTCTGCATGAATCGGATCTATTGCTGTCTGATGATGTTGTTGAAACAATTGTTGACAAGACATTTAGTGATGCAGATTTAAAAGGTGATGGAAA AATTGATCCTGAAGAGTGGAAGGAATTTGTGTCTAAGAACCCTTCTCTTATAAAGAACATGACTCTACCTTATTTAAAGGATATAACCTTGGCATTTCCT AGCTTCGTGTTAAGCACTGAAGTTGAAGATTCAGAAGTGTAG
AA sequence Show only first row Show all	>Potri.012G015100.4 pacid=42783133 polypeptide=Potri.012G015100.4.p locus=Potri.012G015100 ID=Potri.012G015100.4.v4.1 annot-version=v4.1 MGCYHSKRTKETPGYEEPTVLAAETPFTVSEVEALYELFKKLSSSVIDDGLIHKEELQLALFRNKNRRNLFADRIFDLFDVKRNGVIEFGEFVRSLGVFH PNAPVEDKIHFTFRLYDLRQTGFIEREELKEMVLAILHESDLLLSDDVVETIVDKTFSDADLKGDGKIDPEEWKEFVSKNPSLIKNMTLPYLKDITLAFP SFVLSTEVEDSEV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.012G015100 [exp]	0	1
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.006G096800 [exp]	3.74	0.8950
					Potri.003G152500 [exp]	10.19	0.8621
					Potri.006G056101 [exp]	12.16	0.8812
AT3G29060			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G086800 [exp]	16.06	0.7386
AT4G15620			Uncharacterised protein family...		Potri.001G323700 [exp]	16.97	0.8509
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.003G218900 [exp]	17.32	0.8317
AT2G41760			unknown protein		Potri.006G051500 [exp]	18.43	0.8595
AT3G48140			B12D protein (.1)		Potri.012G074900 [exp]	20.39	0.8458
AT3G05320			O-fucosyltransferase family pr...		Potri.012G118800 [exp]	24.81	0.8522
					Potri.003G038525 [exp]	28.93	0.8304

Compare expression of checked genes

Potri.012G015100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.