Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49240 615 / 0 EMB1796 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G10270 234 / 3e-66 GRP23 glutamine-rich protein 23 (.1) AT1G12300 160 / 2e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 150 / 3e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 147 / 4e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 137 / 6e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 137 / 9e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 136 / 2e-33 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G17140 136 / 3e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 135 / 4e-33 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G227800 [exp] 251 / 9e-72 AT1G10270 672 / 0.0 glutamine-rich protein 23 (.1) Potri.003G002950 [exp] 245 / 4e-69 AT1G10270 646 / 0.0 glutamine-rich protein 23 (.1) Potri.005G045000 [exp] 152 / 8e-39 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 148 / 2e-37 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G276500 [exp] 141 / 6e-35 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G019200 [exp] 139 / 2e-34 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G149800 [exp] 138 / 3e-34 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 138 / 4e-34 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 138 / 5e-34 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022406 [exp] 703 / 0 AT3G49240 769 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018109 [exp] 690 / 0 AT3G49240 763 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002990 [exp] 242 / 2e-68 AT1G10270 290 / 4e-86 glutamine-rich protein 23 (.1) Lus10024469 [exp] 151 / 7e-38 AT1G10270 620 / 0.0 glutamine-rich protein 23 (.1) Lus10039056 [exp] 136 / 5e-33 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030513 [exp] 131 / 9e-32 AT3G09060 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 131 / 1e-31 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040633 [exp] 129 / 5e-31 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018567 [exp] 126 / 3e-30 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10021989 [exp] 127 / 6e-30 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.012G015400.6 pacid=42784156 polypeptide=Potri.012G015400.6.p locus=Potri.012G015400 ID=Potri.012G015400.6.v4.1 annot-version=v4.1 ATGTCTTTCTCTAAACCCACAACTTTCCTAGCCCACCTCAAAACCCTAACCACCAAAACTCCTCTCCACCACCGCCACGCGTCACCATCCCACACCATCT CCGTCCGCTTCCTCTCCTTCTCCTCCCCAGAAGAAGCCGCCGCCGAACGCCGCCGCCGCAAACGCCGTCTCCGCATTGAACCCCCACTCTCTTCCCTCAA CAGAAACCAACAACAAACCCAACAAATCCCTAAACCCATCCAAAACCCTAATGCCCCAAAACTCCCTGAACCCATTTCCTCTCTTACTGGCAACCGCTTG AATCTTCACAACAAGATTCTAACCCTAATTCGTGAAAATGATCTTGAAGAAGCTGCACTTTATACCCGCCATTCGGTTTATTCAAACTGTAAGCCCACAA TTTGCACTGTTAATGCTGTGCTTAATGCGCAATTACGCCAATCAAAGTACTCTGATTTGCTTTCTTTGCATAGGTTTATCACTCAGGCTGGCATTGCTGC AAATGTGATCACTCATAATCTATTGTTTCAAACGTATTTAGATTGTAGAAAGCCGGACACGGCACTAGAATATTATAAACAGATGGTTAATGAGGCTCCT TTGAGCCCTTCACCAACGACTTATAGGATTATGATTAAAGGGTTGGTAGATAATGGGAAGTTAGAGAAGGCTTTGGAGTTGAAAGATGAAATGATTGCGA TTAAAGGTTTTTCACCAGATCCGGTTATTTATCATTATTTGATGGTGGGTTGTGTGCGGAGTGGGGATTCAGATTCGGTTTTTAGGCTTTACGAGGAGCT GAAGGAGAAGATGGGAGGTGAGGTTGTGGGGAATGGAGTTGTCGTTTATGGGGGGTTGATGAAAGGGTATTTTATGAGAGGGATGAAGAAGGAGGCGATG GAGTGTTATGGTGAGTTTTTGAGGGAGAATTTGAGGGGCAAGTGGAGTGCGGTTGCGAATAATTCAGTGCTTGATGCATTGTGTAAGAATGGTGAATTTG ATGAAGCATTGAAGTTGTTTGAGAGGATGTTAAGAGAGCATAACCCGCCAAAGAGTTTGGTTGTGGATTTGGGAAGTTTTAATGTTATGGTTGATGGGTA TTGTTTGGAAGGGAGGTATAAGGATGCCATTGAAGTTTTATTGAAAATGGGTGATTATAGGTGCAATCCAGATACTTTGTCATTTAATAATTTGATTGAT CAGCTGTGCAGCAATGGAATGCTGGTTGAAGCTGAGACAGTTTATGGAGAGATGGATGGAAAGGGGGTTAAACCAGATGAGTATACTTATGTTCTATTGA TGGATACTTGCATTAAAGAAAATAGAATCGATGATGGGGCGGCTTACTTTAGGAAAATGGTTGAATCAGGGTCGAGGCCGAACTTGGCAGTTTATAATAG ATTGGTTGATGAGTTGGTTAAAGTGGGGAAGATTGATGAAGCAAAATCATTTTATGATATGATGGTGAAGAAACTCAAGATGGATGATGAGAGCTACAAG TTTATGATGAAGACAATGAGTGATGTCGGGAAATTGGATGAGGTGCTTAAAATGGCTGAAGGAATAATTGATGACGAGGAAGCTGAGTTTAGTGAGGAGC TGCAGGAGTTTGTTAAGGGAGAATTGAGAAAGGATGGGAGAGAAGAAGAGTTAACAAAGCTTTTGGAAGAGAAAGAGAGGCAGAAAGCTGAGGCTAAGGC CAAAGAGGTCGAGGCAGCTGAGGCTTCCAAGAGAAGTGCAAAAGCTGTCATCAACTCTCTAATTTCACCCATTGGAAAAAAGGAAGCTGAGACAGAGTCC GGAGCTAATGAGAATGCCATTGAGGCGTCCTTGGCTAACAAAGGGCATGCTGAGAAAGGAGAAAGCGTTGAGGAAGCTACTATTGCAGAGTTTTCTCCCA CTCATGTAAACACAGAGGAGGGAGTAAATAAAGGTGATGATTCAGATGAGACTGAAGCTACTATTGCAGAGTCTTCTCCCACTGATGCAAACACAGGGAG GAGTAATTAA
AA sequence Show only first row Show all	>Potri.012G015400.6 pacid=42784156 polypeptide=Potri.012G015400.6.p locus=Potri.012G015400 ID=Potri.012G015400.6.v4.1 annot-version=v4.1 MSFSKPTTFLAHLKTLTTKTPLHHRHASPSHTISVRFLSFSSPEEAAAERRRRKRRLRIEPPLSSLNRNQQQTQQIPKPIQNPNAPKLPEPISSLTGNRL NLHNKILTLIRENDLEEAALYTRHSVYSNCKPTICTVNAVLNAQLRQSKYSDLLSLHRFITQAGIAANVITHNLLFQTYLDCRKPDTALEYYKQMVNEAP LSPSPTTYRIMIKGLVDNGKLEKALELKDEMIAIKGFSPDPVIYHYLMVGCVRSGDSDSVFRLYEELKEKMGGEVVGNGVVVYGGLMKGYFMRGMKKEAM ECYGEFLRENLRGKWSAVANNSVLDALCKNGEFDEALKLFERMLREHNPPKSLVVDLGSFNVMVDGYCLEGRYKDAIEVLLKMGDYRCNPDTLSFNNLID QLCSNGMLVEAETVYGEMDGKGVKPDEYTYVLLMDTCIKENRIDDGAAYFRKMVESGSRPNLAVYNRLVDELVKVGKIDEAKSFYDMMVKKLKMDDESYK FMMKTMSDVGKLDEVLKMAEGIIDDEEAEFSEELQEFVKGELRKDGREEELTKLLEEKERQKAEAKAKEVEAAEASKRSAKAVINSLISPIGKKEAETES GANENAIEASLANKGHAEKGESVEEATIAEFSPTHVNTEEGVNKGDDSDETEATIAESSPTDANTGRSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Potri.012G015400 [exp]	0	1
AT3G15000			cobalt ion binding (.1)		Potri.001G393400 [exp]	1.00	0.9630
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032312 [exp]	2.00	0.9369
AT4G20020			unknown protein		Potri.003G015100 [exp]	3.87	0.9230
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	9.38	0.9217
AT4G36580			AAA-type ATPase family protein...		Potri.007G023900 [exp]	9.38	0.8913
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.009G103700 [exp]	13.26	0.8814
AT1G75670			DNA-directed RNA polymerases (...		Potri.005G236800 [exp]	13.41	0.8663
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Potri.001G390600 [exp]	14.83	0.9088
AT1G78930			Mitochondrial transcription te...		Potri.007G001800 [exp]	15.19	0.9058
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.007G009500 [exp]	17.32	0.9082

Compare expression of checked genes

Potri.012G015400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.