Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27680 49 / 5e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G53540 42 / 2e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G013580 [exp] 179 / 9e-61 AT5G53540 68 / 8e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G027101 [exp] 66 / 2e-15 AT4G27680 166 / 3e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G017760 [exp] 66 / 2e-15 AT4G27680 164 / 1e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G027901 [exp] 61 / 1e-13 AT5G53540 182 / 2e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G022985 [exp] 53 / 5e-11 AT5G53540 95 / 7e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G007700 [exp] 50 / 1e-08 AT4G27680 615 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G055212 [exp] 45 / 5e-08 AT4G27680 84 / 8e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G025351 [exp] 41 / 2e-05 AT4G27680 322 / 5e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008835 [exp] 49 / 3e-08 AT4G27680 649 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022361 [exp] 49 / 3e-08 AT4G27680 632 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G015670.1 pacid=42783981 polypeptide=Potri.012G015670.1.p locus=Potri.012G015670 ID=Potri.012G015670.1.v4.1 annot-version=v4.1 ATGGAAGCAAGAAACCTGAGCTCTTCTCACATGGGAAACTTCTTGGTCCACAAAAAGGGATATTGTTATATGGACCTCCAGGCACCGGGAAGACCATGCT TTACATCAGCTATTGCCAAAGAGTCTGGAGTTGTTTGTATAAATGTGAGGATCTCTAATCTGATGAGCAAGTGGGCAATGCACAAAATCTTGGCACCTCA GATGACTATCAGGTTCAAGGCCATTGTCGTAGTCAGACTTGCAGAGAGTTCTTGGCACATCAACTAA
AA sequence Show only first row Show all	>Potri.012G015670.1 pacid=42783981 polypeptide=Potri.012G015670.1.p locus=Potri.012G015670 ID=Potri.012G015670.1.v4.1 annot-version=v4.1 MEARNLSSSHMGNFLVHKKGYCYMDLQAPGRPCFTSAIAKESGVVCINVRISNLMSKWAMHKILAPQMTIRFKAIVVVRLAESSWHIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53540			P-loop containing nucleoside t...		Potri.012G015670 [exp]	0	1
AT5G53540			P-loop containing nucleoside t...		Potri.012G013580 [exp]	1.00	0.9898
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.002G257300 [exp]	2.44	0.8593
AT4G14103			F-box/RNI-like superfamily pro...		Potri.001G395000 [exp]	2.82	0.8463
					Potri.006G120901 [exp]	3.16	0.8661
					Potri.010G186750 [exp]	3.16	0.8455
AT5G20810			SAUR-like auxin-responsive pro...		Potri.018G063400 [exp]	3.46	0.8446
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G267100 [exp]	5.19	0.8294
AT2G35550	BBR_BPC	BPC7, BBR/BPC7,...	basic pentacysteine 7 (.1.2.3....		Potri.001G133900 [exp]	5.47	0.8262
					Potri.003G183150 [exp]	7.74	0.7919
AT4G30520		SARK	SENESCENCE-ASSOCIATED RECEPTOR...		Potri.018G101300 [exp]	7.93	0.8419

Compare expression of checked genes

Potri.012G015670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.