Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49250 426 / 7e-148 IDN1, DMS3 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) AT5G24280 167 / 8e-45 GMI1 gamma-irradiation and mitomycin c induced 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012600 [exp] 759 / 0 AT3G49250 435 / 3e-151 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.002G172000 [exp] 378 / 9e-130 AT3G49250 311 / 1e-103 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016100 [exp] 199 / 1e-55 AT5G24280 1107 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023253 [exp] 491 / 1e-173 AT3G49250 359 / 7e-122 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008855 [exp] 468 / 2e-164 AT3G49250 345 / 2e-116 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008854 [exp] 384 / 8e-133 AT3G49250 289 / 1e-95 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10030244 [exp] 266 / 5e-86 AT3G49250 241 / 2e-76 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10003997 [exp] 258 / 2e-83 AT3G49250 226 / 7e-71 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10022400 [exp] 189 / 2e-52 AT5G24280 1270 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1) Lus10018114 [exp] 44 / 3e-05 ND 47 / 3e-07
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G016000.1 pacid=42784308 polypeptide=Potri.012G016000.1.p locus=Potri.012G016000 ID=Potri.012G016000.1.v4.1 annot-version=v4.1 ATGTTTCAACCCAGCAACCATCCTCAGGATGCATCGTCATCTGTGTTAATGCAAGTGGATCCGAAAGAAAGTGTGGTTGTCAAGGATGAGATGCAAAATG GAGTATATCCACAAGCACAAACCATCATCTACAATTCTAAGAAACTTCAAGATGATTTGCATGTGTTAGGGATGAAAATCAAGCATCACGAAGACAACAT TAAGTTACTGAAGAGTCACAAATACAAATTAGATGATTCCATTCTTGATCTTCAAGTTACCCTTGGCAAATATCATTCTTCAACACAGCCAAACACTGAA AATGATGCCCATTCCTCTAATCCGAGTGAGGAGGAAACGACCAAACAAATTCTACGGCATGAAAAATCTGCTGCAGGTATTTTGTGCCAGCTGAAAATGC ACCATGACACTCAAACTTCTCATCTGTCATTGACAAAAGATGTACTTGGTGTTGTTGCTACACTTGGCAAGGTAGATGATGATAATCTTAGCAGGCTTTT CTCTGAGTACTTAGGTGTGGAGACTATGCTGGCAATTGTCTGTAAAACGTATGAAGGTGTGAAAGCTCTTGAAACATATGACAAGGATGGCCAGATAAAT AAAGGCTCTGGCTTTCATGCCGTTGGTGCTTCTATTGGGAAGGAACTGGATGGTCGATTTCTTGTCATATGTCTTGAAAATCTAAGGCCCTATTGCGGTG AATTCATGGTGGATGACCCACAAAGGAGACTTGATCTCCTAAAGCCAAAATTACCCAATGGGGAGTGCCCACCTGGTTTCATTGGCTTTGCTGTAAATAT GATCAATGTGGAATTCACAAATTTATTTCTTCTCACAGGCAGTGGACATGGCCTTAGAGAGACTCTATTTTATAACCTGTTCTCTCACGTGCAAGTTTAT AAAACAAGGGAAGACATGGCGTTCTCCCTTCCTTGTATAAGTGATGGGGCCATTTCTCTGGATGGTGGGATGATAAAGGGTGCTGGTGTCTTTTCTCTAG GTAATCGGAATGATGTGGATGTAAGATTCCCAAAATCTTCTGTGACATCAACCCTACCTGACAACTACATTGACACCAATAAGCATCTCAAAGAGATGAA ATGGAAAAGGGAAACAATGCTGGAGGATATAAAGAGAGAACAAGCATTATTGGATACTGCAAGGCAAAGTTTTGAGAGAAAGAAGGAAGAGTTTGTTAAA TTTCTGGCTCAAAGCTCAGCATATGCAACTCGGGTGCAGACAGGATTTACTCCAAGATAA
AA sequence Show only first row Show all	>Potri.012G016000.1 pacid=42784308 polypeptide=Potri.012G016000.1.p locus=Potri.012G016000 ID=Potri.012G016000.1.v4.1 annot-version=v4.1 MFQPSNHPQDASSSVLMQVDPKESVVVKDEMQNGVYPQAQTIIYNSKKLQDDLHVLGMKIKHHEDNIKLLKSHKYKLDDSILDLQVTLGKYHSSTQPNTE NDAHSSNPSEEETTKQILRHEKSAAGILCQLKMHHDTQTSHLSLTKDVLGVVATLGKVDDDNLSRLFSEYLGVETMLAIVCKTYEGVKALETYDKDGQIN KGSGFHAVGASIGKELDGRFLVICLENLRPYCGEFMVDDPQRRLDLLKPKLPNGECPPGFIGFAVNMINVEFTNLFLLTGSGHGLRETLFYNLFSHVQVY KTREDMAFSLPCISDGAISLDGGMIKGAGVFSLGNRNDVDVRFPKSSVTSTLPDNYIDTNKHLKEMKWKRETMLEDIKREQALLDTARQSFERKKEEFVK FLAQSSAYATRVQTGFTPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.012G016000 [exp]	0	1
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.014G132400 [exp]	1.41	0.8312
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	1.41	0.8026
AT1G11440			unknown protein		Potri.004G029500 [exp]	3.00	0.7799
					Potri.003G065900 [exp]	5.47	0.7349
AT4G16650			O-fucosyltransferase family pr...		Potri.003G077500 [exp]	10.95	0.7521
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.008G077900 [exp]	11.40	0.7261
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	14.69	0.7635
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.002G010600 [exp]	16.73	0.7399
AT3G56370			Leucine-rich repeat protein ki...		Potri.019G058600 [exp]	19.67	0.7369
AT5G59480			Haloacid dehalogenase-like hyd...		Potri.001G242300 [exp]	20.39	0.7182

Compare expression of checked genes

Potri.012G016000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.