Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24280 1105 / 0 GMI1 gamma-irradiation and mitomycin c induced 1 (.1) AT3G49250 186 / 4e-51 IDN1, DMS3 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012600 [exp] 200 / 8e-56 AT3G49250 435 / 3e-151 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016000 [exp] 197 / 7e-55 AT3G49250 426 / 8e-148 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.002G172000 [exp] 169 / 7e-46 AT3G49250 311 / 1e-103 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022400 [exp] 1211 / 0 AT5G24280 1270 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1) Lus10023253 [exp] 190 / 2e-52 AT3G49250 359 / 7e-122 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10030244 [exp] 168 / 2e-45 AT3G49250 241 / 2e-76 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008855 [exp] 169 / 3e-45 AT3G49250 345 / 2e-116 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10003997 [exp] 164 / 5e-44 AT3G49250 226 / 7e-71 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008854 [exp] 157 / 7e-42 AT3G49250 289 / 1e-95 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G016100.6 pacid=42782673 polypeptide=Potri.012G016100.6.p locus=Potri.012G016100 ID=Potri.012G016100.6.v4.1 annot-version=v4.1 ATGTTTGGATATGGTGGACCGATTGCTACCATGCATTTAGGGAGACGTGCTTTAGTATCTTCCAAGACAAAGGAGTCAAGGAAAGTCTTTACTCTACATC TTGAGAGAGAGGCTCTGCTCCGCAGTTCTGGTTCTGAACCAACTTGGAAGACTAGTGGAGGCATGAGGGATCCTTCAGAAGATGAAATTGGAAAATCCCC TCAGGGAAGTTTCACAAAGGTTGAGATATTGGAGCCTAAAGTAAGAGACTTGGACAGATTTCAACTCCAATGCAAGCTGAAGGACATATATTTTCCTTAT ATTCAGTGTGATGAGGTGTCCAAAACTGGGAAGACTACCAGACCTGTTGAATTTCAGGTTAATGGTATTGATTTAGCTGAGATTGATGGTGGGGAGGTGT CAATTACCAACTTGCACTCTTGCAATGGTCCAGAGTTTGTTTTTCAGCTTTGCTTTTCCATCAAACAGGATGTTGCCTCAACCAGAAGCTCAGGTTCAAG GGCGTCTCAAGAAGCCAATGCACGTATAAAGTGTGTTTATTTCCCCATTTCTGAGGGAAAAGAGAGTATTGAAAAGATATTGGAGAATTTGGAAGATCAA GGGTGTGGAAATGGAGAAAGCTTTGAGACCTTCACACGTGTCTCTATTCGGAGGCTTGGCCGTCTACTTCCAGATGCTCGTTGGGCATGTCTTCCTTTTA TGGAATTCAAGCAGAAAAAAGGAGATAAAGCTCACATATTGAAGAGATGCTGCTTAAGAGTTAAATGTTTTATTGAGACTGATGCTGGTTTCAATCCTAC ACCCTCAAAGACTGATCTAGCACACTGCAATCCTTTTACAATTGCTTTGAAGAACTTCAGCCATAAGATGCCTGAGAAAGAAAAAGAAGTTAATGTTGAC ATTTCAAGGAATGGTAAATTGTTAAGTCCTTCACATCTGGAAAAGGAGTATGAAGATTGGATTCTTGAGATGCATTCTCAATATGATACAGAAGTCAGTG CTGGTGAGGATGATGGAGTTCTTGTTGTTGGCCCCACAAACAAAATACCTGGCATTTCATCTGATGTTGTGAGAGTGCGTGATACTTTGACGAGGAAGGG AGCAATTTGGAAACGTGGTCAGAAAATAAAAGTTTTAAAGGGAGCTGGCCCAGGGTTCCATAATAAAAATGTTTACCTAACATTAGAACATTTTTTGATT GAAGGAGTTCAAGGCGATGCTGGTGGGGATGCTCGGATTATATGCAGGCCACTGGACATTGCAGAAGAGAATGGCTGTGTGCTTTCAGTTAAAGATGAGA TTGCCAGATTTGATATTCGCAGCTCTATATCAATACCTATTAGTATGATCGACTCTGGGAAGTGCCAAACTATTGAAAGTTCTGAGTGGAATTGCCAACT TCAGAAGCAAAGTCAGAAAGCTCCCTCTACGATTGAAGTGCTTGGAAGAAAACATTGTCAAGAGTTGGAGATTGATGGGGGATTCCCTGCTGAATCTACA GTTGAAGCTGGATGCACTCCTCCAACGGAAATAGTGGCAGTTGTTCGGCCTGGCTGTTATGTTTCTTCCAGTCATTCAAAGATTTTGGACCAAAAGTATA TTGTCAAAACTAATTTAGAGATGTCTATAGAGGTTAAAATCAGAAAATCAGCAGAGGAATGCCAAAATGTAGGGCATATATATTCAGCGCGCATAGGTCC TTCTTCTCATAAAGGATTTGATGGCTTGTATATTTTTTCACTGGGTTGCAAGTTTCCTAACTTATTTAAAGAGGCTGGTGTTTACACTTTTTTATTCACT CTTAGTGATAATAATTGTAAAAAATATGAAAAAAGATTGATGGTCAAGGCATCTCGAGAGGTTGGAAAGTGGAAGCTTTTGGGTGATATACAGGGAAAAC CATGTGTGAGGGTGGGTTCACGATTTCCATCACTCTCTATTGGATGTCTTGACATCTACGGCAATCAAATCCCATTTAAATCTGTTCCAGAAATAACTGT GAGGCTAGATTCAATCATGGGTGTGCTTGCTGAAATAGACAAATTTAAGAAAGGCCTTTCTTCTGATAAATTGGCCCTTAAAGTTCAGAATATGCTAATT GTGAGCGACAAGTTGGATAGAATACGGCCAGAGTATGAAGCCACTTTGGTGATATGCCCTGTAGATGGGTTGGTTTCAGTTTCTATTCCGTGTCAAGTTA TGCCTGGATCAGTACAGCACATCACAGGCCAACCACCAATACAGGAAAAACACTTGCTTCCAGGTTTTGTGGTGAAAGAACTTGTGTTAAAGATGCTTGA TGCTCATGGTAACCACATCAAAAAAGGTTTGGAAGTTCAGTTGAATGTGGATGGGTTTCATATCCTTGATAAAGAAGGTTCAAAGCGTAAGGTGGACAAG GATGGATGCATTGATCTCAGTGGTGTCTTGAAGGTAACAGCTGGTTTTGGAAGAATAGTATCATACTCTGTTTCATATCAAGACAAAGTTGTTTTTAAGC AAGAGCTTCAAACTGAGAAGAGGGAGCTGAGAATTGCATCAAAGCTACCAGAGTTTCTTACAGCAGGATCTGATCTGGAAAATATAGTTTTTGAAGTTGT CGATTCTCAGGGTGATGTTGATCCTCGTATTCATAATGAAGAGAAAGCTGGCCAGTGCCATTCACTAACTATAAAGTCAGATTCATTTAATTTACAGGAT GCTATTCAGTATACTTTGAGGCATGGTCGCTGCGCTATTCTGGCTATTCGAATCCCTCCAATTGAAGGAAGCTTTTGCTTTATTGCTGCTCACTCATGTT ACTCAGAGCTGCAGCTGAGGGTCATACTTCCAGTCATGAAAGCCCCAATAGTGGAGTGTGATGAGAATTTATCACCATATTCAAGCAGAAAAGTCCCACT GCTTCGGGACTCATTATCCCTCGAGCATACTGAAAGCCTAATGACGCCCATTGAAAATAATGAAAAGGGACTAGTGGATGACATTGAAAAATATGGTGAG CGAATTGGAAATTCTGAAAGGCAACTAAAAGTCCTGAATGAAAAAAAGACAGAAATTGAGGAGTACGTGTCTGGACTGCAAGCTTCCATGGAACGAACCT TGAACAATTCAAACTATGTGCTTACTAAGGAGGAGATCCTGGTACAAATTGAAAGCAGGAACCATTCTGCAGCATCTATTCTTTGCCATTGTTATAGAGA TTTATCATCGCAAGTACCACAAAACCATTTCATGGAGGGTATATTCGGGTTGGTTGCCCTCCTTGGAACTGTTCGCACCAACAAGCTAAGCAGGATATTG GCTGAGTTCTTGGGTGAAGACCAAATGCTTGCTGTTGTGTGCAGATCCAAGGAAGCTGCAAGTGCTTTTGGAAAATCTATTTGTGGTCGTTTTCTTGTTA TATGCCTGGAGGATATAAGGCCTTACACAGGGGAGCTTGAATGTGGTGACCCACAGAGGAAACTAAAGCTGCAAGATCCTACATTACAATGTGGGAACGT GCCATCAGGTTTCATTGGGTATGCTGCCAATATGATTAATATAGATACCCGAGATATGAACATAAGCACAGCATCTGGATATGGTCTTCGAGAAACTTTG TTCTATCGTCTTTTTGGAGAACTTCAAGTTTATGACACCAAAGAACATATGAATGAAGCCGGTGCTTGTATCAAACATGGTGCTGTTTCTTTAGACGGTG GGATCAACCGAGTCACTGAAAATGGAATTATGTCTCTTGGATGCTGGGATTCTGAAATTTGCTTTCCAGTCGGGACCTTGGAGAATGAGATGAGTCCTGC TCCAGAGAGGATGAAAATCCAAATGCAACTCGAAGCAGGCATGGAAATGTTGCAAGATATAACAGGACAGATAGAGCTTGTGACCAGACTGCGTGAAAAT GCTTTAAAGAAGTTGAAGAAGAAATCCAAGAATTATAGCAAACTTATGGATCATGTAGAGGCAGTGGAGTCTCTGCGTAATAGGAAATAG
AA sequence Show only first row Show all	>Potri.012G016100.6 pacid=42782673 polypeptide=Potri.012G016100.6.p locus=Potri.012G016100 ID=Potri.012G016100.6.v4.1 annot-version=v4.1 MFGYGGPIATMHLGRRALVSSKTKESRKVFTLHLEREALLRSSGSEPTWKTSGGMRDPSEDEIGKSPQGSFTKVEILEPKVRDLDRFQLQCKLKDIYFPY IQCDEVSKTGKTTRPVEFQVNGIDLAEIDGGEVSITNLHSCNGPEFVFQLCFSIKQDVASTRSSGSRASQEANARIKCVYFPISEGKESIEKILENLEDQ GCGNGESFETFTRVSIRRLGRLLPDARWACLPFMEFKQKKGDKAHILKRCCLRVKCFIETDAGFNPTPSKTDLAHCNPFTIALKNFSHKMPEKEKEVNVD ISRNGKLLSPSHLEKEYEDWILEMHSQYDTEVSAGEDDGVLVVGPTNKIPGISSDVVRVRDTLTRKGAIWKRGQKIKVLKGAGPGFHNKNVYLTLEHFLI EGVQGDAGGDARIICRPLDIAEENGCVLSVKDEIARFDIRSSISIPISMIDSGKCQTIESSEWNCQLQKQSQKAPSTIEVLGRKHCQELEIDGGFPAEST VEAGCTPPTEIVAVVRPGCYVSSSHSKILDQKYIVKTNLEMSIEVKIRKSAEECQNVGHIYSARIGPSSHKGFDGLYIFSLGCKFPNLFKEAGVYTFLFT LSDNNCKKYEKRLMVKASREVGKWKLLGDIQGKPCVRVGSRFPSLSIGCLDIYGNQIPFKSVPEITVRLDSIMGVLAEIDKFKKGLSSDKLALKVQNMLI VSDKLDRIRPEYEATLVICPVDGLVSVSIPCQVMPGSVQHITGQPPIQEKHLLPGFVVKELVLKMLDAHGNHIKKGLEVQLNVDGFHILDKEGSKRKVDK DGCIDLSGVLKVTAGFGRIVSYSVSYQDKVVFKQELQTEKRELRIASKLPEFLTAGSDLENIVFEVVDSQGDVDPRIHNEEKAGQCHSLTIKSDSFNLQD AIQYTLRHGRCAILAIRIPPIEGSFCFIAAHSCYSELQLRVILPVMKAPIVECDENLSPYSSRKVPLLRDSLSLEHTESLMTPIENNEKGLVDDIEKYGE RIGNSERQLKVLNEKKTEIEEYVSGLQASMERTLNNSNYVLTKEEILVQIESRNHSAASILCHCYRDLSSQVPQNHFMEGIFGLVALLGTVRTNKLSRIL AEFLGEDQMLAVVCRSKEAASAFGKSICGRFLVICLEDIRPYTGELECGDPQRKLKLQDPTLQCGNVPSGFIGYAANMINIDTRDMNISTASGYGLRETL FYRLFGELQVYDTKEHMNEAGACIKHGAVSLDGGINRVTENGIMSLGCWDSEICFPVGTLENEMSPAPERMKIQMQLEAGMEMLQDITGQIELVTRLREN ALKKLKKKSKNYSKLMDHVEAVESLRNRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Potri.012G016100 [exp]	0	1
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Potri.011G095100 [exp]	1.00	0.9028	ATGSL04.1
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028700 [exp]	2.44	0.8455
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	4.47	0.8957
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.015G041900 [exp]	8.36	0.8301
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.009G025200 [exp]	10.39	0.8472
AT3G14470			NB-ARC domain-containing disea...		Potri.015G121800 [exp]	10.81	0.8476	FRGA-A30.27
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.010G237000 [exp]	10.90	0.8431
AT1G28220		ATPUP3	purine permease 3 (.1)		Potri.002G099600 [exp]	14.69	0.8317
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.013G042600 [exp]	15.00	0.8281	Pt-WRKY39.2
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.007G135000 [exp]	16.43	0.8466

Compare expression of checked genes

Potri.012G016100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.