Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49260 214 / 4e-64 IQD21 IQ-domain 21 (.1.2.3) AT3G22190 74 / 5e-14 IQD5 IQ-domain 5 (.1.2) AT2G26180 71 / 4e-13 IQD6 IQ-domain 6 (.1) AT1G01110 65 / 5e-11 IQD18 IQ-domain 18 (.1.2) AT5G03040 63 / 2e-10 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 62 / 3e-10 IQD1 IQ-domain 1 (.1.2) AT3G52290 59 / 2e-09 IQD3 IQ-domain 3 (.1) AT2G26410 56 / 5e-08 IQD4 IQ-domain 4 (.1) AT2G43680 54 / 1e-07 IQD14 IQ-domain 14 (.1.2.3) AT4G00820 54 / 2e-07 IQD17 IQ-domain 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012500 [exp] 573 / 0 AT3G49260 213 / 9e-64 IQ-domain 21 (.1.2.3) Potri.010G218100 [exp] 75 / 3e-14 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.001G215200 [exp] 71 / 3e-13 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.016G086300 [exp] 71 / 7e-13 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 65 / 4e-11 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.006G226600 [exp] 65 / 4e-11 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.001G448100 [exp] 65 / 5e-11 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.009G015800 [exp] 64 / 6e-11 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.014G104600 [exp] 63 / 2e-10 AT4G00820 432 / 2e-146 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018115 [exp] 329 / 3e-108 AT3G49260 358 / 8e-120 IQ-domain 21 (.1.2.3) Lus10022399 [exp] 322 / 3e-105 AT3G49260 340 / 2e-112 IQ-domain 21 (.1.2.3) Lus10019916 [exp] 74 / 5e-14 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 73 / 2e-13 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 71 / 4e-13 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 71 / 6e-13 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 62 / 3e-10 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10013522 [exp] 62 / 4e-10 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10004107 [exp] 57 / 2e-08 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10015067 [exp] 56 / 2e-08 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.012G016200.9 pacid=42782704 polypeptide=Potri.012G016200.9.p locus=Potri.012G016200 ID=Potri.012G016200.9.v4.1 annot-version=v4.1 ATGGGGAAGAAAGGAAAAGGATGGTTTACATCTGTGAAGAGAGTGTTCAAATCATCATCTCCTAAGGAATTACCAGTAGGGAAAAAGAAAGACAACGCAG AGAAATGGCAACATGAGGCTCCAGAAGTTGTGTCATTAGAGCATTTTCCTACTGGAAGTTCTCCTGATGTTACAAATGATGAGAGCAATGTATCAACTCC AGTAACTGAAGATAGAAATCATGCCATTGCTGTGGCAGTAGCGACTGCTGCCGCAGCAGAAGCTGCGGTTGTAGCTGCTCAAGCGGCGGCTAAAGTTGTT CGCTTAGCTGGTTATGGACGACAATCAAAGGAAGAAAGAGCTGCCATCCTCATACAATCATTCTATAGGGGCTACCTTGCTCGGCGTGCCTTACGCGCAT TGAAGGGATTGGTGAGGCTCCAAGCATTAGTGAGAGGCCACAATGTAAGAAAGCAAGCACAAATGACAATGAGAAGCATGCAAGCTCTTGTTCGTGTGCA AGCAAGAGTAAGAGCAAGAAGACTTGAATTAGCTCACGAGAAGCTTCAAAGGAAGACAGAGGAAGAAGATGAACGAAGACTACCAGTGGACGAAGACTTT ATGAATCCAAAGAATCCATTGAAGAGTTATAAATGGGATAGGAGGAATCAAAGTTCAGATAATTTCAAAGAAAATGCTTCAAAGAAGCATGATGCTGTCA TGAAAAGAGAGAGAGCCCTTGCTTATGCTTATGCCTTCCAGCAGCAGCAGCAGCAACAATTACTCTCACAAAATAGTCCTAATGGTAAAGAAACAGGACA TTTTGTGAACGAACACGAGAAGATGCAATGGGGATGGAATTGGCTTGAGAGATGGATGTCAGCACAATCATACAACGTGCGTCAATCGGGTCCAAATGAA GGGTCTTACGTGACAGTAAACACAACTACAACCACGACCACCACAGAGGACATGTCCGAGAAGACAGTAGAGATGGACATGGTGACCCCAACAGGCACTA GCAATCCCAACATGGGCATGCTAGACACCAATCCATATTCGAATCGACCCCAATGGCAATCAAGTTCAAGCAATGTACGTAGCTACATGGCTCCGACCCA GTCCGCAAAGGCGAAAGTGCGTTCTCAAAGTTTGATCAAGCAACGTGCCCCAGCGACACCTCTGTGGAATCCATCCACCAAGAAAGATTCAAGCATTGTT GGTCCAGGTTGTGATTCTTCCAGTTCAGGTGGTGGAACAACAACTTATCACGCTCCAAGAAGTCCTAGCCCCAAACATAACGGGATGCGCCTGCATTCGA GAAGACATGCTGGTGGATATAGCCCTGATTTCAATGGCGGTGATGATTGGAGGTTGCCTCCTCTTGATGGTCATGGATGGAGGAATGATTTTGGTTGA
AA sequence Show only first row Show all	>Potri.012G016200.9 pacid=42782704 polypeptide=Potri.012G016200.9.p locus=Potri.012G016200 ID=Potri.012G016200.9.v4.1 annot-version=v4.1 MGKKGKGWFTSVKRVFKSSSPKELPVGKKKDNAEKWQHEAPEVVSLEHFPTGSSPDVTNDESNVSTPVTEDRNHAIAVAVATAAAAEAAVVAAQAAAKVV RLAGYGRQSKEERAAILIQSFYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRSMQALVRVQARVRARRLELAHEKLQRKTEEEDERRLPVDEDF MNPKNPLKSYKWDRRNQSSDNFKENASKKHDAVMKRERALAYAYAFQQQQQQQLLSQNSPNGKETGHFVNEHEKMQWGWNWLERWMSAQSYNVRQSGPNE GSYVTVNTTTTTTTTEDMSEKTVEMDMVTPTGTSNPNMGMLDTNPYSNRPQWQSSSSNVRSYMAPTQSAKAKVRSQSLIKQRAPATPLWNPSTKKDSSIV GPGCDSSSSGGGTTTYHAPRSPSPKHNGMRLHSRRHAGGYSPDFNGGDDWRLPPLDGHGWRNDFG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.012G016200 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.017G016700 [exp]	1.00	0.9561
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.003G173300 [exp]	2.00	0.9444
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.002G233400 [exp]	2.64	0.9257	Pt-RIC2.2
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	3.00	0.9227
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	3.87	0.9360	Pt-SAM1.1
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Potri.002G168400 [exp]	4.24	0.9142
AT3G03550			RING/U-box superfamily protein...		Potri.013G073500 [exp]	7.41	0.9213
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	7.74	0.9328	OMT1.1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	8.83	0.9288
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.015G142000 [exp]	8.94	0.9214

Compare expression of checked genes

Potri.012G016200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.