Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52990 200 / 1e-63 SNARE-like superfamily protein (.1) AT4G27840 194 / 3e-61 SNARE-like superfamily protein (.1) AT4G10170 96 / 1e-23 SNARE-like superfamily protein (.1.2) AT1G33475 92 / 4e-22 SNARE-like superfamily protein (.1) AT3G54300 64 / 5e-12 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT4G15780 52 / 5e-08 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT1G04760 52 / 1e-07 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT1G04750 52 / 1e-07 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G33120 49 / 5e-07 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT2G32670 49 / 9e-07 ATVAMP725 vesicle-associated membrane protein 725 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012300 [exp] 471 / 1e-170 AT5G52990 192 / 3e-60 SNARE-like superfamily protein (.1) Potri.013G094900 [exp] 100 / 6e-25 AT4G10170 270 / 3e-91 SNARE-like superfamily protein (.1.2) Potri.003G048600 [exp] 96 / 4e-23 AT4G10170 254 / 1e-84 SNARE-like superfamily protein (.1.2) Potri.010G239900 [exp] 72 / 8e-15 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 64 / 7e-12 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.008G209100 [exp] 54 / 1e-08 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.012G119600 [exp] 54 / 2e-08 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.003G177700 [exp] 53 / 4e-08 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.002G240900 [exp] 49 / 5e-07 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022397 [exp] 253 / 2e-84 AT5G52990 189 / 3e-59 SNARE-like superfamily protein (.1) Lus10002944 [exp] 101 / 1e-25 AT4G10170 247 / 2e-82 SNARE-like superfamily protein (.1.2) Lus10043431 [exp] 62 / 6e-11 AT3G54300 325 / 9e-111 vesicle-associated membrane protein 727 (.1.2) Lus10034145 [exp] 62 / 1e-10 AT3G54300 322 / 4e-109 vesicle-associated membrane protein 727 (.1.2) Lus10022804 [exp] 53 / 3e-08 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 53 / 4e-08 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 52 / 7e-08 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 52 / 8e-08 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 52 / 1e-07 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 51 / 2e-07 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G016400.2 pacid=42783170 polypeptide=Potri.012G016400.2.p locus=Potri.012G016400 ID=Potri.012G016400.2.v4.1 annot-version=v4.1 ATGATTTCTAACCCAAATCATGTTTTCTACGCTTGCATTGCTAAAGGACCTACCGTTGTTGCTGAATTCTCACCGGGAAAAGAATCAGGAATTGAAATCA TTGGTCAAAGATGCGTAGAGAAAACCCCGCCTAACCATTCCATGTTTTCTCATACAATCCGCAACAAGACTTACACTTTCTTAATCGATGACCCTTTTGC CTATTTTGCTATTTTTGATGAGAATCTCCAGAAGTCTGAGCATTTATGGTTTTTGAACCGTGTAAAGAATGGTTTTGAGGAGTTTTGGGGGTCTAAGATG ATGAAAGATGGTGAAAAGATTGGTTCCTTTTGTTTCCAAGGAGAATTGCGGTGTATGTTTAGGGAGATATTGGCTCTGGATGCTGACTTGGTGAATACTT TAATGGAGGAATCATCAAAGGATGGTAGGAATCCAAACTTGGATTCGACGAATGGGAAGGGAGCTGTGATCAGACCTTTGCTTCCAAAGCCAACTAAAGT TTTGATGATGATGAAGAAGAAGCCATCTGGAGAGGCTAATGGAGATCATCATGGTGGTGATTTGGATAATAATAATTATAAGGAGAATGGTGTTGGTGAG CATGGAAATAGGGAGGTTTCGGTTTCGATGATACAAAAGAGTGGTGGGTTTTATATGGGGGATGGTAAGCAAAAGGCTAAACAGATTTGGAAGAAGCATG TTTGGGTGGTTTTGACATTGGATTTGATTGTTTGTGCTGTTTTGTGTGGGGTTTGGTTGTGGGTTTGCAGGGGGTTTAAGTGCATTGATGGTTGA
AA sequence Show only first row Show all	>Potri.012G016400.2 pacid=42783170 polypeptide=Potri.012G016400.2.p locus=Potri.012G016400 ID=Potri.012G016400.2.v4.1 annot-version=v4.1 MISNPNHVFYACIAKGPTVVAEFSPGKESGIEIIGQRCVEKTPPNHSMFSHTIRNKTYTFLIDDPFAYFAIFDENLQKSEHLWFLNRVKNGFEEFWGSKM MKDGEKIGSFCFQGELRCMFREILALDADLVNTLMEESSKDGRNPNLDSTNGKGAVIRPLLPKPTKVLMMMKKKPSGEANGDHHGGDLDNNNYKENGVGE HGNREVSVSMIQKSGGFYMGDGKQKAKQIWKKHVWVVLTLDLIVCAVLCGVWLWVCRGFKCIDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52990			SNARE-like superfamily protein...		Potri.012G016400 [exp]	0	1
AT3G49530	NAC	NTL6, ANAC062	NTM1 \(NAC WITH TRANSMEMBRANE ...		Potri.015G004100 [exp]	9.27	0.7316
AT1G67900			Phototropic-responsive NPH3 fa...		Potri.010G046800 [exp]	14.69	0.7538
AT3G24150			unknown protein		Potri.006G067100 [exp]	18.46	0.7550
AT5G21940			unknown protein		Potri.006G219800 [exp]	19.49	0.7348
AT5G53020			Ribonuclease P protein subunit...		Potri.012G016600 [exp]	29.66	0.7058
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G179700 [exp]	33.15	0.6958
AT3G08890			Protein of unknown function, D...		Potri.006G104000 [exp]	54.77	0.6774
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Potri.004G172100 [exp]	54.99	0.7290
AT1G67480			Galactose oxidase/kelch repeat...		Potri.008G176000 [exp]	65.36	0.7483
AT3G49810			ARM repeat superfamily protein...		Potri.002G116600 [exp]	69.90	0.7391

Compare expression of checked genes

Potri.012G016400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.