Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53020 465 / 5e-153 Ribonuclease P protein subunit P38-related (.1) AT3G45900 86 / 2e-17 Ribonuclease P protein subunit P38-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012000 [exp] 1240 / 0 AT5G53020 379 / 6e-120 Ribonuclease P protein subunit P38-related (.1) Potri.001G130100 [exp] 73 / 3e-13 AT3G45900 281 / 8e-91 Ribonuclease P protein subunit P38-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018117 [exp] 666 / 0 AT5G53020 410 / 4e-133 Ribonuclease P protein subunit P38-related (.1) Lus10022396 [exp] 393 / 2e-125 AT5G53020 414 / 1e-134 Ribonuclease P protein subunit P38-related (.1) Lus10034732 [exp] 80 / 2e-15 AT3G45900 264 / 3e-84 Ribonuclease P protein subunit P38-related (.1) Lus10033275 [exp] 77 / 1e-14 AT3G45900 268 / 2e-85 Ribonuclease P protein subunit P38-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G016600.3 pacid=42783910 polypeptide=Potri.012G016600.3.p locus=Potri.012G016600 ID=Potri.012G016600.3.v4.1 annot-version=v4.1 ATGGATGGAAAGGAGGTTTCTGGTTCGTATTTGATGGTCTCGGAAGGGAAGAGTGACAGCTTCTATCCAATGTATTTTGGTGTTTCTTGTGCTTTCTTAG CCCTCAAAGTTTTGACAAGGCCTGATAAGGAAGACGATAGATGGTCAGAATTATGCGATAAAATGCTTCAAGGAAGCGCACAACTCTTGGGATTGCTTGT TTGGAAAATCCAGAGAGGAGGAGCAAATGGACAATGTGAGCTTCTTCATAAGCTGGAGACTGCTAAGAAAGAGATCATGGAGCTGAAGAAAATAAGGTGC GAAGATGCGAAAGCGAACGAGAAAGTTGTTAGTATCTATGCATCGCAAGAGCAGAACTGGTTGATCGAAAGGAAGAAGCTTCGGCAGCACATTGGAGCTC TTATGAATGAATTGAGGTTTCTCGAGAAGAAGAATGAAGAAGCTATTTCTGAATTGAATGAAAAATTGAACGAGATGGAACTTTTGGTGCAGTCCAAGGA TAAGGCAGTAGAGGAAGAAGAGTATAAGAGGAAGGAGTTGGAAGAAAAATTAGCAAAGACCGAAAAGATTGCAGAAGAATTGAGAGAAACGGCAAAGCGT GAAGCTCAAGAGCATTCTACTGATCTTTGGAAGCACAAAACCGCCTTCCTTGAGCTGGTATCGAACCACCGGCAGCTTGAAGCTGAGATGGGTAGAGCAC TTAGGCAGCTTGAAGCTAAAAGGCAAGAGCTTGATTCAGTCTTAGAACAAAAGGAGGAGTCAGTGTTGCTGACTCAAAAATTGTCCATGGAAGTTGTGAA GATGAGAAAGGATTTGGAACAGAAAGATAAGATCTTGTCAGCAATGCTGAGGAAATCCAAGATGGATACAACTGAAAAGGAACTGCTCTTAAAGGAGGTT AAATTATCAAAGGCTAAAAGAAAGCAAGCTGAACTAGAAAGAGAAAGGTGGAAATCTGTTTCAGAGTCTAAGCACGAGAGACATTCATTAAGAAGTATGT TTTCTCACCACGCCAACCTGAGATCGGATGATCCTCCAATTGAAACAGGGGCATCACAAGCTGTGAACGGCAGATCACAGTCAATTGATTATGATATTGA GTATGAGAATCCTGAGTTTCAAAAGAACTCGGAAGCTTTTTCGCCACTTTCTAACCTCTATTCACCCGGAGGAAATGATGAACTAGCTATTACAGCTGAT GTCAAACGGTTGGAAGGATGGGTTCGATCCGAAGCACAAAAGTATGCAGCTGCAATTGAGAAGAAGCATCATCTAGAGATAGGTGCTTTTGCAGAACAGA TGAGACTCAAAGATGAGAAATTAGAAGCATTTCGTTGGCGAACGCTGAGCATGGAAATAGAATCAAAGCGACTGCAGTCTCACATTGAAGGGCTAAACCG GGATGTTTCACAGATAAGGCATGAGAGCATGAAACTGGAAGCCTTGTTGTTGGAGAGGCAAGAAGAAATAACTGAATTGAAAAGGCAGCTCAAGGTACAA GTAAAACCTCAGTTTTGCCAAAAGGCTAATTTAAGTTCATCTCTAGAGGATCCGGCAGTAGCCCATGATGCCATTTGTTCCAATGCCAAGAATGTAATGA AAGAACCAACAGAAAATGATCAAGGGACAAAAGTACATCAGATGGAAACATCTCGAGAGATGGATCCTGAAAAAGAAGAAGACGATGAAGAAGGCCTTCA CAACCAGTTCAAGAATGTCGTTAAAACTGTCCAGTCTCCAGAAAAAGAGTTTGAGGAAGAAAAGGATGTTGCCAGCCACGGTGGTACTCAGGAAGAAAGT GCGAGTCCAGTGGTGGTTGATACTGTAGAAAAGTTAGCATTGACTAGCCAGTCATCGATGAAGACAAATAATTCACCATGGAGGATGGATCTCCATGCTC TTGGAGTTTCTTATAAGATAAAGAGGCTGAAGCAGCAACTTCTAATGCTGGAGAGATTGGCAGGAAAGCAAGACAGTGGTGAACATATAGGGAACAGTGA TGAGGCAAAAACTGGGATAAAGGGCTTCAAATTATTGATGTCTTTGCTTAATAAACAAGTTAACAGGTACCAGTCACTTCAAGGGAAGACCGATGAACTC TGCAAAAGGATGCATGATAATGATGTGGACATGAGTCGAGGAGATTCCAACACTAGCACTGCCAGGAAAAAGGAAGAAACTAAAACATTAGAGCATTTCC TTGAGGAAACATTTCAGGTTCAGAGATACATGGTTGCAACAGGACAGAAACTGATGGAAGTTCGGTCCAAAATTGCATCTGGTTTTGTCGAGGTCCCTGA AGAGCTCGAAAAATCTGCTGGAAGCTTTGACATAAAGCGTTTTGCTGAAAACATAAAAATTCTTTTTCAGGAAGTTCAAAGAGGTCTTGAAGTTCGGATT TCTCGAATTATTGGTGATCTTGAGGGCACTCTAGCTTGTGAGGGAATGATTCGTATGAGAAGGTAG
AA sequence Show only first row Show all	>Potri.012G016600.3 pacid=42783910 polypeptide=Potri.012G016600.3.p locus=Potri.012G016600 ID=Potri.012G016600.3.v4.1 annot-version=v4.1 MDGKEVSGSYLMVSEGKSDSFYPMYFGVSCAFLALKVLTRPDKEDDRWSELCDKMLQGSAQLLGLLVWKIQRGGANGQCELLHKLETAKKEIMELKKIRC EDAKANEKVVSIYASQEQNWLIERKKLRQHIGALMNELRFLEKKNEEAISELNEKLNEMELLVQSKDKAVEEEEYKRKELEEKLAKTEKIAEELRETAKR EAQEHSTDLWKHKTAFLELVSNHRQLEAEMGRALRQLEAKRQELDSVLEQKEESVLLTQKLSMEVVKMRKDLEQKDKILSAMLRKSKMDTTEKELLLKEV KLSKAKRKQAELERERWKSVSESKHERHSLRSMFSHHANLRSDDPPIETGASQAVNGRSQSIDYDIEYENPEFQKNSEAFSPLSNLYSPGGNDELAITAD VKRLEGWVRSEAQKYAAAIEKKHHLEIGAFAEQMRLKDEKLEAFRWRTLSMEIESKRLQSHIEGLNRDVSQIRHESMKLEALLLERQEEITELKRQLKVQ VKPQFCQKANLSSSLEDPAVAHDAICSNAKNVMKEPTENDQGTKVHQMETSREMDPEKEEDDEEGLHNQFKNVVKTVQSPEKEFEEEKDVASHGGTQEES ASPVVVDTVEKLALTSQSSMKTNNSPWRMDLHALGVSYKIKRLKQQLLMLERLAGKQDSGEHIGNSDEAKTGIKGFKLLMSLLNKQVNRYQSLQGKTDEL CKRMHDNDVDMSRGDSNTSTARKKEETKTLEHFLEETFQVQRYMVATGQKLMEVRSKIASGFVEVPEELEKSAGSFDIKRFAENIKILFQEVQRGLEVRI SRIIGDLEGTLACEGMIRMRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53020			Ribonuclease P protein subunit...		Potri.012G016600 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.012G080200 [exp]	4.24	0.7254
AT3G24150			unknown protein		Potri.006G067100 [exp]	12.40	0.7268
AT3G10600		CAT7	cationic amino acid transporte...		Potri.008G017100 [exp]	14.17	0.7414
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.012G103200 [exp]	17.00	0.6869
AT5G52990			SNARE-like superfamily protein...		Potri.012G016400 [exp]	29.66	0.7058
AT4G30400			RING/U-box superfamily protein...		Potri.006G176700 [exp]	62.57	0.6298
					Potri.014G103100 [exp]	90.11	0.6528
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.005G153800 [exp]	112.80	0.6233
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Potri.018G097600 [exp]	117.02	0.6051
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Potri.004G140900 [exp]	122.96	0.5924	Pt-CYP707.5

Compare expression of checked genes

Potri.012G016600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.