Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27810 87 / 2e-21 unknown protein AT5G53030 80 / 2e-18 unknown protein AT2G46535 47 / 1e-06 unknown protein AT3G61840 44 / 8e-06 Protein of unknown function (DUF688) (.1) AT4G00950 45 / 1e-05 MEE47 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011900 [exp] 194 / 5e-63 AT4G27810 97 / 3e-25 unknown protein Potri.014G100200 [exp] 70 / 2e-14 AT4G00950 87 / 7e-20 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Potri.002G172900 [exp] 62 / 9e-12 AT4G00950 113 / 5e-30 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010114 [exp] 61 / 3e-11 AT4G10810 63 / 5e-13 unknown protein Lus10005920 [exp] 54 / 1e-08 AT4G27810 44 / 3e-05 unknown protein Lus10005972 [exp] 43 / 4e-05 AT4G00950 62 / 2e-11 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Lus10030238 [exp] 42 / 0.0001 AT4G00950 61 / 1e-10 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G016700.1 pacid=42784175 polypeptide=Potri.012G016700.1.p locus=Potri.012G016700 ID=Potri.012G016700.1.v4.1 annot-version=v4.1 ATGAGGTCTGATGAGCTAGGTTATGATCCAAGCCCAACTCCAAAACTCTCCTTGTTTTCACTTCCAGGCAGGCTACATGAGTCACCGGCAAGGATGCTAA CATCACCAATCCATCCATTAGCTTCAGTACCCTTCAAGTGGGAGGATGCGCCGGGCAAGCCTAGACTTCCTTGCATGCCACAATCCGATAAGCCCAAGAT TGATAGGTGCTTGGAGTTGCCACCAAGGCTGTTAACTAAGGCCCAAGAGAGCAACATCCCCTCTCCAGCAACAGTCTTGGATGGACCTTACGTGCCTCGG TCCTTGTCTCTTGGAAAAGGAAGTTCATTCAGTAGCTCAGAGAATTTGGGCACGAAGGTGAAGACCAAAGGCAAGGCTATATTTGGGTCTAGCAGGTGGG GAAGTTTCAATAAGAATAATAAACAAGCTGTTGATCCTAGCCATGGAGGTGAAACGAAAGTTAAGATCACAAGAATTACAAGGAGACCGAGATTCTTAGG GTTTTCTCACAATTTGTGGACAAAAATATGTGAAAACCTTGAGCACGTGGTCTCTTGGAGACGAAGGTAA
AA sequence Show only first row Show all	>Potri.012G016700.1 pacid=42784175 polypeptide=Potri.012G016700.1.p locus=Potri.012G016700 ID=Potri.012G016700.1.v4.1 annot-version=v4.1 MRSDELGYDPSPTPKLSLFSLPGRLHESPARMLTSPIHPLASVPFKWEDAPGKPRLPCMPQSDKPKIDRCLELPPRLLTKAQESNIPSPATVLDGPYVPR SLSLGKGSSFSSSENLGTKVKTKGKAIFGSSRWGSFNKNNKQAVDPSHGGETKVKITRITRRPRFLGFSHNLWTKICENLEHVVSWRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27810			unknown protein		Potri.012G016700 [exp]	0	1
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108801 [exp]	2.82	0.7861
AT4G03460			Ankyrin repeat family protein ...		Potri.019G106000 [exp]	11.66	0.7139
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G014750 [exp]	12.64	0.7215
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.016G015550 [exp]	13.41	0.7300
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.007G056900 [exp]	19.18	0.7710
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Potri.002G064000 [exp]	20.49	0.7646	ATMEPCT.1
AT5G47580		ASG7	ALTERED SEED GERMINATION 7, un...		Potri.003G110700 [exp]	30.21	0.7205
					Potri.006G088500 [exp]	37.88	0.7274
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.016G009700 [exp]	38.52	0.7152
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.008G041800 [exp]	39.94	0.7023

Compare expression of checked genes

Potri.012G016700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.