Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49290 353 / 4e-122 ABIL2 ABL interactor-like protein 2 (.1.2) AT5G24310 343 / 7e-118 ABIL3 ABL interactor-like protein 3 (.1.2) AT5G42030 159 / 2e-46 ABIL4 ABL interactor-like protein 4 (.1) AT2G46225 134 / 6e-37 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142800 [exp] 239 / 4e-77 AT3G49290 292 / 3e-98 ABL interactor-like protein 2 (.1.2) Potri.001G088100 [exp] 224 / 3e-71 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.014G092300 [exp] 136 / 1e-37 AT2G46225 396 / 1e-139 ABI-1-like 1 (.1.2.3) Potri.002G165900 [exp] 133 / 2e-36 AT2G46225 397 / 5e-140 ABI-1-like 1 (.1.2.3) Potri.018G082600 [exp] 74 / 5e-15 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005919 [exp] 384 / 7e-134 AT5G24310 400 / 2e-140 ABL interactor-like protein 3 (.1.2) Lus10022393 [exp] 315 / 3e-107 AT5G24310 360 / 2e-125 ABL interactor-like protein 3 (.1.2) Lus10008737 [exp] 139 / 1e-38 AT2G46225 377 / 5e-132 ABI-1-like 1 (.1.2.3) Lus10002151 [exp] 136 / 1e-37 AT2G46225 370 / 2e-129 ABI-1-like 1 (.1.2.3) Lus10032421 [exp] 115 / 2e-29 AT3G49290 171 / 2e-51 ABL interactor-like protein 2 (.1.2) Lus10023052 [exp] 101 / 1e-25 AT5G24310 101 / 7e-27 ABL interactor-like protein 3 (.1.2) Lus10043223 [exp] 84 / 1e-17 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10011102 [exp] 81 / 2e-16 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10023654 [exp] 65 / 1e-11 AT5G42030 91 / 3e-21 ABL interactor-like protein 4 (.1) Lus10034928 [exp] 62 / 2e-11 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G016900.4 pacid=42782790 polypeptide=Potri.012G016900.4.p locus=Potri.012G016900 ID=Potri.012G016900.4.v4.1 annot-version=v4.1 ATGGGTACAATGACTGCATCTTCTCTCTCTAGAGAGGCGTCAAACTATGACGAGGTTTCTATGCAGCAGAGCTTGCTCTTCTCTGATAGTCTGAAGGATT TGAAGAATCTGAGAAGTCAGCTATACTCGGCAGCGGAGTATTTTGAATTATCATACACAAATGATGACCAAAAACAGATAGTGGTGGAAACATTGAAAGA TTATGCCATCAAAGCTCTTGTGAATACAGTGGACCATTTGGGTTCTGTGACATACAAGGTTAATGATCTCTTGGATGAGAAAGTTGATGAAGTTTCTGGA ACAGAGTTTCGCGTGTGTTGCATTGAACAGAGATTACGGACATGTCAAGAGTACATTGATCATGAGGGCATCTCACAACAGTCACTGGTGATTGACACTC CAAAGTACCATAAGCGGTACATCTTGCCAGTTGGAGAGACTATGCATGGTGCCATCCGCACTAAATCAAAATACCAAGGGTGCAGCCTAGATGATGAAGA TGATTGGCATCAATTTAGGAATGCTGTTCGAGCTACAATTAGAGAAGCCCCATCTTCAGCCAGGGAAACCCCGACATCTTCAGCCAGGGAAACCCCGACA TCTTTGGTGAATTCAATGAGAAAGGGACGTTCCCCGTCACCTTCTCCACGACCTCCTCCACAACGATCTGCAACGTTTTCCTTCACATCTACCATGCCCA AAAAAGATATAGATAAGCGAAGCATTTCACCGCACCGATTTCCACTCTTGCGTTCTGGTTCTGTGTCAAGTAGGTCAACAACTCCAAATACAAGCAGGCC TACCACTCCAAGCTCTGCTCCTGCCAAAAAACGGTACCCTTCCGAGCCTCGAAAATCAGCATCCATGCGACTCCAGGCTGAAAAGGAAAATACCAAAGAC ATCGAACAATATCCCAGCAAAAGTAAGCGTCTCCTCAAAGCCTTACTTAGCCGGCGCAAATCTAAGAAAGATGAAATGCTATATACTTACCTGGACGAAT ATTGA
AA sequence Show only first row Show all	>Potri.012G016900.4 pacid=42782790 polypeptide=Potri.012G016900.4.p locus=Potri.012G016900 ID=Potri.012G016900.4.v4.1 annot-version=v4.1 MGTMTASSLSREASNYDEVSMQQSLLFSDSLKDLKNLRSQLYSAAEYFELSYTNDDQKQIVVETLKDYAIKALVNTVDHLGSVTYKVNDLLDEKVDEVSG TEFRVCCIEQRLRTCQEYIDHEGISQQSLVIDTPKYHKRYILPVGETMHGAIRTKSKYQGCSLDDEDDWHQFRNAVRATIREAPSSARETPTSSARETPT SLVNSMRKGRSPSPSPRPPPQRSATFSFTSTMPKKDIDKRSISPHRFPLLRSGSVSSRSTTPNTSRPTTPSSAPAKKRYPSEPRKSASMRLQAEKENTKD IEQYPSKSKRLLKALLSRRKSKKDEMLYTYLDEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Potri.012G016900 [exp]	0	1
AT4G02010			Protein kinase superfamily pro...		Potri.014G119100 [exp]	9.59	0.6654
AT1G54610			Protein kinase superfamily pro...		Potri.013G032200 [exp]	12.32	0.6367
AT1G47655	DOF		Dof-type zinc finger DNA-bindi...		Potri.014G036600 [exp]	12.72	0.6328
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	14.49	0.6755
AT5G22930			Protein of unknown function (D...		Potri.008G032500 [exp]	16.21	0.6818
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.004G173900 [exp]	22.22	0.5872
AT1G21090			Cupredoxin superfamily protein...		Potri.005G192800 [exp]	22.89	0.6755
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Potri.003G134000 [exp]	23.36	0.5738
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.004G062400 [exp]	25.49	0.6243
AT5G01020			Protein kinase superfamily pro...		Potri.006G113600 [exp]	32.72	0.5900

Compare expression of checked genes

Potri.012G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.