Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53050 516 / 0 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 50 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 50 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 45 / 5e-05 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 45 / 6e-05 ATSEH soluble epoxide hydrolase (.1) AT4G15955 42 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 42 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011300 [exp] 678 / 0 AT5G53050 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.014G127200 [exp] 56 / 2e-08 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 56 / 3e-08 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 54 / 6e-08 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 54 / 8e-08 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 52 / 3e-07 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 50 / 1e-06 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 49 / 5e-06 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022392 [exp] 560 / 0 AT5G53050 503 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10005918 [exp] 555 / 0 AT5G53050 494 / 6e-175 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10037559 [exp] 51 / 1e-06 AT4G02340 367 / 2e-127 alpha/beta-Hydrolases superfamily protein (.1) Lus10041790 [exp] 50 / 1e-06 AT3G51000 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 50 / 2e-06 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 48 / 6e-06 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10028340 [exp] 48 / 6e-06 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 46 / 4e-05 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 46 / 4e-05 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 46 / 4e-05 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.012G017100.1 pacid=42782633 polypeptide=Potri.012G017100.1.p locus=Potri.012G017100 ID=Potri.012G017100.1.v4.1 annot-version=v4.1 ATGCCTTTTTGTGAGGTAGCTAAACAACAGACCAGTTTAGATGATACAGTTGATGCTGCTAGCAGCAGCAGCAGCAGCAGCAACAACAACAAAGGCATCA AAATCTTTTACAAGACTTATGGTCATGGCCCCACAAAAGTTCTTCTCATTATAGGATTGGCTGGGACACATGATTCATGGGGTCCACAAATAAAGGGACT TACAGGTACAGAGAGGTCCAATGACGACGATAGAATGAGGGCCATTGATCCGAACTCAAGTGATAGTGGGGGTTGTGGGTATGGTGGCAATGGTATTCAA GTTTGTGCCTTTGATAATCGTGGTATGGGAAGGAGTTCTGTGCCCACCAAGAAATCTGAATATACAACAAAAATAATGGCAAAAGATGCAATTGCTTTGA TGGATCATTTGGGTTGGAGAAAAGCTCATATATTTGGCCATTCAATGGGTGCTATGATAGCTTGCAAGTTAGCAGCAATGGTGCCGGACAGAGTTCTATC TTTGGCATTACTTAATGTGACCGGTGGAGGTTTCGAATGTTTACCAAAGCTTGACAGTCGAACAATATCTGTCGCTATCCGTTTCTTGAAGGCAAAAACT CCTGAGCAAAGGGCTGCAGTTGACTTAGACACCCACTACACAAAGGAATATCTTGATGAGCATGTTGGGTCTAGCACAAGAAGAGCAATTCTGTATCAGG AATACGTCAAAGGTATATCATCAACTGGAATGCAGTCTAGTTATGGTTTTGATGGTCAAGTCAATGCTTGCTGGACGCATAAGATGACACGAACAGAAAT TGAATTAATCAGATCTGCTGGATTTCTTGTATCAGTCATACATGGCAGGCATGATATCATTGCTCAAATATATTACGCGAGGAGGCTTGCAAAGAAGTTG CAGCCTTTTGCTAGATTGGTTGATCTCCACGGTGGGCATCTAGTGAGCCATGAGAGGACCGAAGAGGTCAATCAAGCTCTTTGTGACCTGATCAGTGCTT CGGATAAAAAGATGAACCCACATGTTTGGACTAATTTTCCCAAGGAAAGCTCTCGGTGGTCAGAGAAAGGATCATTATTAGGTAAAACATGTGTAGAGGG TAAAACCGACGACATCTGCTCGACAGTTTGTGTCATCGAAAAGCTGCATCTAAGCATATCATATGTCTTCGGTCTCTTTGTGTTCATGTTTGAGTATATA CAAAGGGCCATAAGAAGTCGGCATCCAGCCAGAGTTGGATCTTCCCTCACATAA
AA sequence Show only first row Show all	>Potri.012G017100.1 pacid=42782633 polypeptide=Potri.012G017100.1.p locus=Potri.012G017100 ID=Potri.012G017100.1.v4.1 annot-version=v4.1 MPFCEVAKQQTSLDDTVDAASSSSSSSNNNKGIKIFYKTYGHGPTKVLLIIGLAGTHDSWGPQIKGLTGTERSNDDDRMRAIDPNSSDSGGCGYGGNGIQ VCAFDNRGMGRSSVPTKKSEYTTKIMAKDAIALMDHLGWRKAHIFGHSMGAMIACKLAAMVPDRVLSLALLNVTGGGFECLPKLDSRTISVAIRFLKAKT PEQRAAVDLDTHYTKEYLDEHVGSSTRRAILYQEYVKGISSTGMQSSYGFDGQVNACWTHKMTRTEIELIRSAGFLVSVIHGRHDIIAQIYYARRLAKKL QPFARLVDLHGGHLVSHERTEEVNQALCDLISASDKKMNPHVWTNFPKESSRWSEKGSLLGKTCVEGKTDDICSTVCVIEKLHLSISYVFGLFVFMFEYI QRAIRSRHPARVGSSLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.012G017100 [exp]	0	1
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.018G146100 [exp]	1.00	0.8518
AT2G46760			D-arabinono-1,4-lactone oxidas...		Potri.002G178300 [exp]	1.41	0.8230
AT1G28370	AP2_ERF	AtERF11	ERF domain protein 11 (.1)		Potri.007G043400 [exp]	4.89	0.7434
AT1G20670			DNA-binding bromodomain-contai...		Potri.005G252200 [exp]	6.48	0.6949
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017500 [exp]	12.32	0.6920	GLT1.2
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Potri.017G130300 [exp]	15.68	0.7664	Pt-MYB20.1,MYB152
AT3G59090			unknown protein		Potri.002G058500 [exp]	17.32	0.6404
AT2G36090			F-box family protein (.1)		Potri.001G452000 [exp]	18.65	0.6723
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	27.74	0.6798
AT5G24610			unknown protein		Potri.015G000900 [exp]	32.86	0.6120

Compare expression of checked genes

Potri.012G017100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.