Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53480 1532 / 0 ARM repeat superfamily protein (.1) AT3G08947 1027 / 0 ARM repeat superfamily protein (.1) AT3G08943 1003 / 0 ARM repeat superfamily protein (.1) AT2G16950 107 / 2e-23 ATTRN1 transportin 1 (.1.2) AT5G19820 74 / 5e-13 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT2G16960 70 / 4e-12 ARM repeat superfamily protein (.1.2) AT3G08960 45 / 0.0002 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010400 [exp] 1733 / 0 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.006G103300 [exp] 1053 / 0 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 1040 / 0 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.009G138200 [exp] 84 / 2e-16 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.004G177700 [exp] 75 / 2e-13 AT2G16950 1279 / 0.0 transportin 1 (.1.2) Potri.016G119900 [exp] 49 / 2e-05 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 47 / 7e-05 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.001G004800 [exp] 47 / 8e-05 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 45 / 0.0002 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023246 [exp] 1519 / 0 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10008864 [exp] 1511 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 1506 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10041453 [exp] 1376 / 0 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10034318 [exp] 1369 / 0 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10023247 [exp] 530 / 4e-180 AT5G53480 509 / 3e-172 ARM repeat superfamily protein (.1) Lus10031905 [exp] 119 / 2e-31 AT5G53480 106 / 7e-28 ARM repeat superfamily protein (.1) Lus10014540 [exp] 85 / 1e-18 AT5G53480 106 / 1e-26 ARM repeat superfamily protein (.1) Lus10023999 [exp] 89 / 8e-18 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10025083 [exp] 87 / 4e-17 AT2G16950 1392 / 0.0 transportin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain CL0020 [poplar] [flax] TPR PF13513 [poplar] [flax] HEAT_EZ HEAT-like repeat
Representative CDS sequence Show only first row Show all	>Potri.012G017500.2 pacid=42784139 polypeptide=Potri.012G017500.2.p locus=Potri.012G017500 ID=Potri.012G017500.2.v4.1 annot-version=v4.1 ATGGCAATGGAAGTGACCCAGGTGCTTTTGAATGCCCAATCTATAGATGGGAATGTGCGGAAGCATGCAGAAGAAAGCTTAAAACAGTTTCAGGAGCAAA ACCTGCCCAGTTTTTTGCTCTCTCTCTCCGGAGAGCTAGCTAATGATGAGAAGCCTGTTGACAGTCGTAAATTAGCAGGTTTAATTCTTAAAAATGCGTT GGATGCAAAGGAACAGCATAGAAAGCTTGAGCTTGTTCAAAGATGGTTGTCGCTGGACAACAATGCAAAGGGTCAAATTAAGGCATGTTTGTTGAAGACA CTTGCTTCTCCTGTACCAGATGCACGGTCAACTGCATCTCAAGTTATTGCCAAGATTGCAGGGATTGAGTTGCCTCAGAGACAGTGGCCAGAGCTGATTG GATCACTTTTATCCAATATTCATCAGTTACCTGCTCATGTCAAGCAAGCTACTTTAGAGACTCTTGGATATTTGTGTGAGGAAGTCTCACCTGATGTTGT AGATCAAGACCATGTAAACAAGATACTTACAGCAGTAGTACAGGGCATGAACGCAACTGAAGGAAACAATGATGTTAGGCTTGCTGCAACCCGAGCACTG TACAATGCACTTGGATTTGCTCAGGCGAACTTCAGCAATGATATGGAGCGTGATTATATCATGAGAGTGGTCTGCGAGGCAACTTTATCCCCAGAAATGA AGATAAGACAAGCTGCTTATGAGTGTCTGGTCTCTATTTCATCAACATACTATGAGAAATTGGCTCCTTATATGCAGGATATCTTTAACATCACGGCGAA GGCCGTGAGGGAAGATGAAGAACCTGTAGCCCTTCAAGCAATTGAATTCTGGAGTTCAATATGTGATGAGGAGATAGATATCTTGGAAGAATATGGGGGT GATTTCACTGGGGATTCTGATGTTCCTTGCTTTTACTTTATTAAGCAGGCTCTCCCTGCTTTGGTCCCAATGTTGTTGGAGACTCTCCTAAAGCAAGAGG AGGATCAGGATCAAGATGAAGGAGCTTGGAATATTGCAATGGCTGGTGGAACATGCCTTGGTTTGGTTGCAAGGACTGTGGGAGATGATATTGTGCAGCT TGTTATGCAATTCATTGAAGATAACATTACAAAACCAGATTGGAGGCATAGAGAGGCAGCTACTTATGCATTTGGCTCGATCTTGGAAGGTCCTTCCCCT GAGAAACTAACGCCTCTTGTTAATGTTGCTTTGAACTTCATGCTGACTGCTTTGACAAAGGATCCAAATAACCATGTGAAGGATACAACTGCTTGGACCC TTGGTCGAATCTTTGAATTCCTCCATGGTTCAACTGTGGATACACCGATAATTACTCAAGCAAATTGCCAACAAATTGTCACGGTACTACTCCAGAGCAT GAAGGACGTTGCCAATGTAGCAGAGAAGGCATGTGGTGCCCTCTATTTCCTTGCCCAGGGTTATGAAGAGGTGACCCCATCATCACCTCTTACTCCTTAC TTCCAGGAAATTGTCCAGACACTTCTCTTTGTTACCCACAGAGAGGATGCTGGGGAGTCCCGATTAAGGACTGCTGCATATGAAACGTTGAATGAGGTGG TGAGATGCTCGACTGATGAAACAGCACCAATGGTGCTGCAACTGGTTCCTGTCATCATGACGGAGCTTCACAATACTCTTGAAGGGCAGAAGCTTTCTTC TGATGAGAGAGAGAAGCAGGGTGAATTGCAAGGGCTTCTCTGTGGTTGCTTACAGGTCATAATTCAGAAGTTAGGCTCCTCTGAGCCAACTAAGTATGTG TTCATGCAATATGTAGATCAGATTATGGGGCTCTTCCTGAGGGTCTTTGCTTGTAGAAGTGCAACTGTGCATGAGGAGGCCATGTTAGCCATAGGAGCCC TTGCCTATGCAACTGGTCCTGATTTTGCAAAATACATGCCAGAGTTTTACAAGTACCTAGAAATGGGCCTTCAGAATTTTGAGGAGTACCAAGTCTGTGC TGTGACTGTCGGTGTGGTGGGTGATATCTGCAGGGCATTGGAAGATAAAATTTTGCCTTACTGTGATGGTATTATGACTCAGCTTCTCAAGGATTTATCA AGCAACCAGCTGCATAGATCTGTGAAGCCTCCTATTTTCTCTAGCTTTGGCGACATTGCCCTGGCAATAGGAGAGAATTTTGAGAAGTACTTGATGTATG CCATGCCAATGCTGCAAAGTGCCGCAGAGTTGTCTGCCCACACATCTGTTGCTGACGATGAAATGACTGAATACACAAATTCTTTGAGAAATGGAATTTT GGAGGCATACTCTGGAATTCTTCAAGGGTTTAAGAATTCTCCTAAAACTCAGCTCTTGATTCCTTATGCACCTCACATCCTGCAGTTCTTGGATAGCATG TACATGGAGAAAGACATGGATGATGTCGTTATGAAAACTGCAATTGGAGTCCTGGGAGATTTAGCAGATACACTGGGAAGTAATGCTGGCTCTTTGATAC AGCAATCTCTTTCTAGCAAAGACTTTTTAAATGAATGTTTGTCTTCTGATGACCATATGATTAAGGAATCTGCTGAATGGGCCAAGTTGGCCATCAGTCG TGCCATTTCTGTTTGA
AA sequence Show only first row Show all	>Potri.012G017500.2 pacid=42784139 polypeptide=Potri.012G017500.2.p locus=Potri.012G017500 ID=Potri.012G017500.2.v4.1 annot-version=v4.1 MAMEVTQVLLNAQSIDGNVRKHAEESLKQFQEQNLPSFLLSLSGELANDEKPVDSRKLAGLILKNALDAKEQHRKLELVQRWLSLDNNAKGQIKACLLKT LASPVPDARSTASQVIAKIAGIELPQRQWPELIGSLLSNIHQLPAHVKQATLETLGYLCEEVSPDVVDQDHVNKILTAVVQGMNATEGNNDVRLAATRAL YNALGFAQANFSNDMERDYIMRVVCEATLSPEMKIRQAAYECLVSISSTYYEKLAPYMQDIFNITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGG DFTGDSDVPCFYFIKQALPALVPMLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVQLVMQFIEDNITKPDWRHREAATYAFGSILEGPSP EKLTPLVNVALNFMLTALTKDPNNHVKDTTAWTLGRIFEFLHGSTVDTPIITQANCQQIVTVLLQSMKDVANVAEKACGALYFLAQGYEEVTPSSPLTPY FQEIVQTLLFVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVLQLVPVIMTELHNTLEGQKLSSDEREKQGELQGLLCGCLQVIIQKLGSSEPTKYV FMQYVDQIMGLFLRVFACRSATVHEEAMLAIGALAYATGPDFAKYMPEFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEDKILPYCDGIMTQLLKDLS SNQLHRSVKPPIFSSFGDIALAIGENFEKYLMYAMPMLQSAAELSAHTSVADDEMTEYTNSLRNGILEAYSGILQGFKNSPKTQLLIPYAPHILQFLDSM YMEKDMDDVVMKTAIGVLGDLADTLGSNAGSLIQQSLSSKDFLNECLSSDDHMIKESAEWAKLAISRAISV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53480			ARM repeat superfamily protein...		Potri.012G017500 [exp]	0	1
AT5G53480			ARM repeat superfamily protein...		Potri.015G010400 [exp]	1.00	0.7483
AT3G18060			transducin family protein / WD...		Potri.012G049200 [exp]	10.39	0.5854
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Potri.003G168000 [exp]	12.40	0.5679	Pt-G6PD.1
AT4G14590		EMB2739	embryo defective 2739 (.1)		Potri.001G277200 [exp]	16.70	0.5860
AT5G63120			P-loop containing nucleoside t...		Potri.012G084600 [exp]	22.58	0.5453
AT4G00525			unknown protein		Potri.002G159100 [exp]	26.07	0.5415
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.013G010900 [exp]	28.35	0.4981	ALPHA.11
AT1G72550			tRNA synthetase beta subunit f...		Potri.013G068100 [exp]	29.18	0.5727
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.006G158676 [exp]	32.04	0.5520
AT1G49400		EMB1129	embryo defective 1129, Nucleic...		Potri.018G150100 [exp]	40.36	0.5663

Compare expression of checked genes

Potri.012G017500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.