Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27780 432 / 4e-152 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 417 / 1e-146 ACBP1 acyl-CoA binding protein 1 (.1) AT4G24230 84 / 7e-18 ACBP3 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) AT2G03430 69 / 2e-13 Ankyrin repeat family protein (.1) AT5G37500 70 / 8e-13 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT5G12320 62 / 2e-11 ankyrin repeat family protein (.1) AT3G05420 65 / 3e-11 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 64 / 7e-11 ACBP5 acyl-CoA binding protein 5 (.1) AT3G02850 63 / 1e-10 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G40160 62 / 2e-10 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010200 [exp] 539 / 0 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.014G018700 [exp] 108 / 1e-26 AT4G24230 133 / 2e-35 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.002G120200 [exp] 106 / 9e-26 AT4G24230 113 / 3e-28 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Potri.013G062000 [exp] 74 / 2e-14 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 71 / 3e-13 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.009G070700 [exp] 66 / 8e-13 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.010G161300 [exp] 66 / 5e-12 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.001G295200 [exp] 66 / 6e-12 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.001G276100 [exp] 62 / 1e-11 AT5G12320 191 / 1e-63 ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005910 [exp] 426 / 1e-149 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1) Lus10022382 [exp] 417 / 2e-146 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10007764 [exp] 100 / 2e-23 AT4G24230 141 / 1e-38 acyl-CoA-binding domain 3 (.1.2.3.4.5.6) Lus10018702 [exp] 99 / 2e-22 AT5G67360 607 / 0.0 Subtilase family protein (.1) Lus10036033 [exp] 65 / 2e-12 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10036968 [exp] 65 / 3e-12 AT2G03430 216 / 7e-72 Ankyrin repeat family protein (.1) Lus10015687 [exp] 68 / 5e-12 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 67 / 1e-11 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037116 [exp] 64 / 2e-11 AT2G03430 284 / 2e-97 Ankyrin repeat family protein (.1) Lus10009696 [exp] 62 / 3e-11 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0632 [poplar] [flax] FERM_M PF00887 [poplar] [flax] ACBP Acyl CoA binding protein CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.012G017700.4 pacid=42784333 polypeptide=Potri.012G017700.4.p locus=Potri.012G017700 ID=Potri.012G017700.4.v4.1 annot-version=v4.1 ATGGCAGATTGGCAACAACTGCTTCCATCAATCTTCATAGGTCTTCTCTTCTCTTACCTCCTCGCCAAACTCATTTCCATCGTCGTTTCATTCCAAAACG ACAATCTCCATATCACACGAAACCCCCAATCCCCAAAACCCCAATCCACCACCACCCCCACCATCCACCACCACCACCAGCACTCTCACGGGGATATTGA TTCGGTGGTCGCAGAACAAGGTAGTGTGCGAAACGACAGCCTGTCAGGGAATGATAGCGGCGGCGACGACGATGACGACGACGACTGGGAAGGTGTGGAG AGTACGGAATTAGATGAAATGTTTAGTGCTGCGACGGCATTTGTGGCGGCAACTGCGGCGGATCGGAATTCGTTGAAGGTATCGAGTGATTTACAGTTGC AGCTTTATGGGTATTATAAGATTGCTACTGAAGGTCCTTGTACTAGTCCGCCTCCTTCTGCTCTCAAAATGACTGCCCGGGCTAAATGGCAAGCGTGGCA GAAATTGGGTGCTATGCCACCAGAAGATGCAATGCAGAAGTACATTGATATTGTTACAGAGCTGTATCCTACTTGGGCTTCTGGTTCTACTGTGAAGAGC AAAGGCAGAGATGGTGACGGACAGAGCATGGATGGCAAAGGACCTATGGGACCGGTTTTCAGCACTTTTGTCTATGAGGAGGAATCAGAAACTGAGTTGA AAATGGATGCCATTCATGCCTTTGCCAGAGAAGGAGAGGTGAATAATTTGCTCAAATGCATTGATAGTGGTGTTTCTGTGAATTTGAGAGATAGTGAGGG CCGGACTCCTTTGCATTGGGCTGTAGATCGTGGTCACCTTGATATTGCCGAGGAGCTTGTTGGAAAGAATGCTGACATAAATGCAAAGGATAATGAAGGC CAAACCCCATTGCATTATGCTACTGTCTGTGAGAGAGAAGCAATTGCTGAATATCTCGTGAAGCAAAATGCTAATACAGATGCGAAGGATAATGATGGTC AGTCTGCCCGTGATCTCTGTGAGTCGGACTGGCCTTTTCTGCAACGTGTGGCATCATAG
AA sequence Show only first row Show all	>Potri.012G017700.4 pacid=42784333 polypeptide=Potri.012G017700.4.p locus=Potri.012G017700 ID=Potri.012G017700.4.v4.1 annot-version=v4.1 MADWQQLLPSIFIGLLFSYLLAKLISIVVSFQNDNLHITRNPQSPKPQSTTTPTIHHHHQHSHGDIDSVVAEQGSVRNDSLSGNDSGGDDDDDDDWEGVE STELDEMFSAATAFVAATAADRNSLKVSSDLQLQLYGYYKIATEGPCTSPPPSALKMTARAKWQAWQKLGAMPPEDAMQKYIDIVTELYPTWASGSTVKS KGRDGDGQSMDGKGPMGPVFSTFVYEEESETELKMDAIHAFAREGEVNNLLKCIDSGVSVNLRDSEGRTPLHWAVDRGHLDIAEELVGKNADINAKDNEG QTPLHYATVCEREAIAEYLVKQNANTDAKDNDGQSARDLCESDWPFLQRVAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Potri.012G017700 [exp]	0	1
AT1G08700		PS1	Presenilin-1 (.1)		Potri.013G067700 [exp]	13.60	0.8016
AT1G61790			Oligosaccharyltransferase comp...		Potri.011G025700 [exp]	26.94	0.7353
AT4G24330			Protein of unknown function (D...		Potri.004G223000 [exp]	52.64	0.7318
AT4G00680		ADF8	actin depolymerizing factor 8 ...		Potri.001G106200 [exp]	63.46	0.6948	Pt-ADF.9
AT2G34250			SecY protein transport family ...		Potri.001G387600 [exp]	85.86	0.6733
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.003G220300 [exp]	90.92	0.6952	TUA2
AT1G14430			glyoxal oxidase-related protei...		Potri.010G034200 [exp]	92.46	0.6616
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.001G087500 [exp]	94.74	0.7137	Pt-BIP.2
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.012G111100 [exp]	133.61	0.6696	CNX1.2
AT4G39390		NST-K1, ATNST-K...	A. THALIANA NUCLEOTIDE SUGAR T...		Potri.007G077900 [exp]	284.82	0.6338

Compare expression of checked genes

Potri.012G017700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.