Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 583 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G34480 382 / 1e-128 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 381 / 2e-128 O-Glycosyl hydrolases family 17 protein (.1) AT3G55430 366 / 5e-123 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 341 / 2e-113 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G46570 335 / 2e-112 Glycosyl hydrolase superfamily protein (.1) AT4G26830 327 / 5e-108 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 328 / 6e-108 O-Glycosyl hydrolases family 17 protein (.1) AT2G39640 318 / 4e-103 glycosyl hydrolase family 17 protein (.1) AT2G01630 311 / 3e-101 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010100 [exp] 567 / 0 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.001G240000 [exp] 485 / 2e-169 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G055900 [exp] 437 / 5e-151 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G056000 [exp] 432 / 3e-149 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 394 / 1e-133 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 387 / 2e-131 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 382 / 2e-129 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 345 / 2e-114 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G203800 [exp] 334 / 2e-110 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023245 [exp] 561 / 0 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 527 / 0 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 440 / 8e-152 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 438 / 2e-151 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10016539 [exp] 434 / 6e-149 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 432 / 3e-148 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 381 / 7e-129 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 379 / 7e-128 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 363 / 1e-121 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 352 / 2e-117 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.012G017800.2 pacid=42784293 polypeptide=Potri.012G017800.2.p locus=Potri.012G017800 ID=Potri.012G017800.2.v4.1 annot-version=v4.1 ATGGGGAAACCCTTGGCTTCATTTTCTTCTTCAATAGTCTCCACTATTTTGCTTCTTGCCTCGGCTTTCAACATTCTAGGGGCGGAAGGAAGCATTGGAG TCAACTATGGCACGGTGGCTGACAACCTGCCTCCACCAGCACAAGTAGCCCATTTTCTTTTAGAATCCACCATTATCAACCGTGTTAGGCTCTTCGATAC GAACACCGAAATTATACAAGCCTTTGCTCACACTGGCATTGCAATCACCATCACTGTCCCCAATGATCAAATCCCTCATCTTACCAATCTAGGTTTTGCA CAAGAATGGGTGAAATCCAATGTCCAGCCTTATGTGCCAGCCACCAATATCGTCCGAATTTTAGTTGGCAATGAAGTAATATCAATTGAAAACAAACTGT CTGTAGCAAGCTTGGTTCCAGCAATGAAAGCACTTCATACAGCTTTAGTTCGTGCATCATTAGACCATAGAATCAAAATCTCTACCCCTCACTCTTTAGG CATTCTCTCAAGTTCAAGCCCACCATCCACTGGAAAATTTCGACAAGGCTACGCTACACGTATTCTTAAACCATTGCTTCGCTTCCTAAGAGCTACCAAT TCACCTTTCATGATTAACCCTTATCCATTTTTTGGTTTCTCTGCTGATACTCTTGATTATGCATTGTTTAGGCCTAATTCAGGAGTGTTTGATGAAAACA CCAAACTTTCTTACACAAACATGTTGGATGGGCAACTTGATGCAGTCTTTTCAGCAATGAAACTTCTTGGTTTTAGTGATATTGAGATTGTCATCGCCGA AACCGGGTGGCCATCGCAGGGAGAATCATCACAACTTGGTGTTGATGCAGAAAGTGCAGCTCAATACAATAGGAATCTAATGCAGCATGTAACATCCGGT GCTGGCACCCCCCTCATGCCCAACCGGACGTTTGAAACTTACATTTTCGCACTTTTTAATGAAGATCTCAAACCAGGGCCTCCTAGCGAGAGGAATTTCG GATTGTTCCAGCCAGACATGACTCCGGTGTACGATATTGGAATCCTAAGGCCAAAGGCTAAATCATCCATTCCTACGAGTCCTGCACCGGTGAGTCCAGG GCCAGGAGGGCCTAAAGAGAAGATTTGGTGCCTTCCTAAACCAGGAGCAGATGTGGAGGCTCTGCAGAGAAACATTGATTATGTGTGTGGGCTGGAAGCG GAGTACTGCAAACCTATTCAAGAAGGTGGTGAGTGCTTCATGCCTAATACAGTGAAAGCACACGCAGCATTCGCCATGAATGCATACTATCAAGGCACAG AAAAGAATGGCTACGATTGCGATTTCGAACAAACCGCAGCCATCTCCAATGTGAATCCAAGCTATGGAAATTGCAAGTATTGA
AA sequence Show only first row Show all	>Potri.012G017800.2 pacid=42784293 polypeptide=Potri.012G017800.2.p locus=Potri.012G017800 ID=Potri.012G017800.2.v4.1 annot-version=v4.1 MGKPLASFSSSIVSTILLLASAFNILGAEGSIGVNYGTVADNLPPPAQVAHFLLESTIINRVRLFDTNTEIIQAFAHTGIAITITVPNDQIPHLTNLGFA QEWVKSNVQPYVPATNIVRILVGNEVISIENKLSVASLVPAMKALHTALVRASLDHRIKISTPHSLGILSSSSPPSTGKFRQGYATRILKPLLRFLRATN SPFMINPYPFFGFSADTLDYALFRPNSGVFDENTKLSYTNMLDGQLDAVFSAMKLLGFSDIEIVIAETGWPSQGESSQLGVDAESAAQYNRNLMQHVTSG AGTPLMPNRTFETYIFALFNEDLKPGPPSERNFGLFQPDMTPVYDIGILRPKAKSSIPTSPAPVSPGPGGPKEKIWCLPKPGADVEALQRNIDYVCGLEA EYCKPIQEGGECFMPNTVKAHAAFAMNAYYQGTEKNGYDCDFEQTAAISNVNPSYGNCKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.012G017800 [exp]	0	1
AT5G41470			Nuclear transport factor 2 (NT...		Potri.001G100500 [exp]	2.64	0.9842
AT5G18970			AWPM-19-like family protein (....		Potri.008G200300 [exp]	4.69	0.9832
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.001G419200 [exp]	5.19	0.9831
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340600 [exp]	5.29	0.9830
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.011G135400 [exp]	5.91	0.9830
AT2G20560			DNAJ heat shock family protein...		Potri.007G136600 [exp]	6.55	0.9514
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034300 [exp]	7.74	0.9824
AT1G47271			Cystathionine beta-synthase (C...		Potri.005G228300 [exp]	8.06	0.9772
AT3G17380			TRAF-like family protein (.1)		Potri.008G005300 [exp]	9.16	0.9808
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.012G038100 [exp]	9.38	0.9806	NAC020

Compare expression of checked genes

Potri.012G017800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.