Plant FIBer expression Database

Potri.012G018100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53490 318 / 8e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G062500
[exp]
44 / 6e-05 AT5G55000 413 / 2e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Potri.019G038400
[exp]
42 / 0.0002 AT5G55000 414 / 1e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007788
[exp]
343 / 1e-120 AT5G53490 301 / 2e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Lus10024602
[exp]
50 / 4e-07 AT1G12250 354 / 1e-123 Pentapeptide repeat-containing protein (.1.2)
Lus10032239
[exp]
48 / 2e-06 AT1G12250 357 / 9e-125 Pentapeptide repeat-containing protein (.1.2)
Lus10020270
[exp]
44 / 6e-05 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Lus10000520
[exp]
43 / 7e-05 AT2G44920 286 / 6e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10002712
[exp]
42 / 0.0002 AT2G44920 287 / 3e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0505 Pentapeptide PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Representative CDS sequence
>Potri.012G018100.1 pacid=42782671 polypeptide=Potri.012G018100.1.p locus=Potri.012G018100 ID=Potri.012G018100.1.v4.1 annot-version=v4.1
ATGGCAACAGCAACTTTTTCCCTCCCTCTCTCTCAAAACAAATTCCCTCTTTATCACTTCTCTTCTGCGCGCCGTCGGTTTCCCATTCCAGACCTTCACT
CACCTCTCAAAATCTGCTGTTCTGGTAGTAGAGATGGTTCTCAATCAAGGGAAAGCTTGTTTCAGTTTAAGAAGGAGATTAATTATGTGGCTTGTGGCAT
TCTCGCTGCTTGGGCTGTGACTGCTGCTTCACCTGTAATTGCTGCTGGTCAGAGGCTGCCCCCACTATCGACAGAACCCAACCGCTGTGAGAAGGCATTT
GTCGGGAATACGATTGGTCAAGCAAATGGTGTTTATGACAAGCCTATTGATCTTCGCTTCTGTGATTATACAAATGACAAATCCAATCTAAAGGGGAAGT
CTCTTGCAGCAGCACTCATGTCAGATGCGAAGTTCGATGGTGCTGATATGACAGAAGTGGTAATGTCTAAGGCTTATGCTGTTGGAGCTAGCTTCAGAGG
AGTAGACTTCTCAAATGCTGTTTTAGACCGAGTTAACTTCGGAAAAGCTGATCTCAAAGGAGCTGTATTTAAGAACACTGTGCTATCAGGCTCCACATTT
GATGAAGCTCAACTGGAAGATGCTATTTTCGAGGATACTATTATCGGCTACATTGATCTTCAGAAGATTTGCAGAAACACATCCATTGGTCCTGATGGAA
GGGCTGAACTGGGCTGCCGATGA
AA sequence
>Potri.012G018100.1 pacid=42782671 polypeptide=Potri.012G018100.1.p locus=Potri.012G018100 ID=Potri.012G018100.1.v4.1 annot-version=v4.1
MATATFSLPLSQNKFPLYHFSSARRRFPIPDLHSPLKICCSGSRDGSQSRESLFQFKKEINYVACGILAAWAVTAASPVIAAGQRLPPLSTEPNRCEKAF
VGNTIGQANGVYDKPIDLRFCDYTNDKSNLKGKSLAAALMSDAKFDGADMTEVVMSKAYAVGASFRGVDFSNAVLDRVNFGKADLKGAVFKNTVLSGSTF
DEAQLEDAIFEDTIIGYIDLQKICRNTSIGPDGRAELGCR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53490 Tetratricopeptide repeat (TPR)... Potri.012G018100
[exp]
0 1
AT5G49300 GATA GATA16 GATA transcription factor 16 (... Potri.014G124400
[exp]
1.41 0.8756
AT4G15110 CYP97B3 "cytochrome P450, family 97, s... Potri.006G006200
[exp]
2.00 0.8760
AT1G79790 AtcpFHy1 flavin mononucleotide hydrolas... Potri.010G143000
[exp]
2.64 0.8446
AT4G16745 Exostosin family protein (.1.2... Potri.003G079000
[exp]
2.82 0.8439
AT5G24930 CO COL4, ATCOL4 CONSTANS-like 4 (.1) Potri.006G267700
[exp]
12.96 0.8447 Pt-COL1.1
AT5G43630 TZP zinc knuckle (CCHC-type) famil... Potri.010G076700
[exp]
18.38 0.8287
AT5G15140 Galactose mutarotase-like supe... Potri.017G080000
[exp]
20.29 0.8567
AT3G09150 ATHY2, GUN3, HY... GENOMES UNCOUPLED 3, ARABIDOPS... Potri.001G253700
[exp]
22.13 0.8400
AT1G09575 Protein of unknown function (D... Potri.013G161300
[exp]
24.08 0.7604
AT3G53140 O-methyltransferase family pro... Potri.006G120000
[exp]
24.67 0.7476 COMTL4

Potri.012G018100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.