Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24320 606 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 579 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 481 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 472 / 5e-158 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G54200 375 / 2e-118 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 374 / 3e-117 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 310 / 2e-96 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 288 / 2e-85 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 288 / 3e-85 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 92 / 5e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009700 [exp] 1201 / 0 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 678 / 0 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G144400 [exp] 614 / 0 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 602 / 0 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 402 / 9e-131 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 400 / 1e-126 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G057600 [exp] 388 / 3e-125 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G403400 [exp] 377 / 5e-118 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 306 / 9e-92 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022377 [exp] 659 / 0 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 577 / 0 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 574 / 0 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 442 / 5e-146 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 425 / 1e-139 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10007783 [exp] 345 / 3e-110 AT5G24320 246 / 3e-73 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020846 [exp] 346 / 5e-110 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033525 [exp] 325 / 6e-102 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 311 / 4e-93 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 307 / 3e-91 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.012G018200.14 pacid=42783896 polypeptide=Potri.012G018200.14.p locus=Potri.012G018200 ID=Potri.012G018200.14.v4.1 annot-version=v4.1 ATGGGAAGTTTGAGTGAAGAAGAACACCGATTTTTTGATGCCTATGAAGACATTGCATCAATTTCTGATGCAAAGTCTGATAGCTTTGAGATATTTGATT CTCATTCTAGTTTTGACAACTCTGTTTCGATTAGTCTTCACCATGAACTATGGATTAAGAGCCTTGGAAGTGTTCAGGAGCAGCGGAGTAAGTTCTTTGA TTGGATGGGAATTGGTTTAAATGAAAATGGGAATAGGAATTTAGAAGCATTTAATCCAGAAGGAGAGAGTGATAGGATTACAGAAAGCAGTGGGGCTGTA CTGAGAAAGTCATGTTTCGAAGATGAATTTTGCTCTACTCGGTCCATGATGTCATGTTGGTCTAATGGTGAATCTAGTTTGTCAGCGGAGTTGGGTTTGA TGGGGAATTTTGTTTGCAGAGAAGGGGATTCAGGCGGGGGAATGGTGTGCAAAGTAGATGAATTGGGGCAAGATGTGAAAGCAAATGAAGGTTGTGAAGT GGACTCAGAACAGTCAGTAGCAGCAGAGGAATCTGAGAACATTTCTGAGTCATCTCCCTCATTTCAGAAACCTATGCAGAATGAAGTTGGGGAACCAAAT ACTTTGGTGGATACTCCAAGAAGGCTTAAGAAGGGGTGGTTGAGTAGAATACGTTCCATTTCATGCATTGTGTATAGCCTACGGGAAGCTGACAAATTGA GACACGATGATGATGATGATGATGATGCACTTCTGCGGTACAGGGTACAAAGAGTTAAGGTTCACCGATATGGGAAGCGAATAAAGGAACTCTCGGCTCT TTATAAAGGACAAGATATCCAGGCCCATGAGGGTTCAATTTTGACCATGAAATTTAGTCCTGATGGGCAGTACCTTGCAAGTGCTGGCGAGGATGGGGTT GTGCGTGTCTGGCAGGTCCTGGAGAGTGAGAGATCAAATGAACTTGACATTCCAGAAATAGATCCATCCTGCATATACTTCACGGTGAACCAACTATCCG AGTTGAAACCCCTCTTGGTTGAAAAAGAAAGGACGGCTAAAATGAGGAGCATGAGGAAAACATCAGACTCTGCATGTGTCATTTTCCCTCCAAAAGTTTT CCGGATTTTGGAGAAACCATTGCACGAGTTCCATGGGCACAGGGAAGAGATCTTGGATCTCTCATGGTCCAAAAATAATCATTTACTATCAGCTTCAGTG GACAAAACTGTCTGTCTATGGCAAGTGGGACGTGACAGTTGCCTCAGAGTTTTCTTACACAGCAATTATGTAACCTGTGTTCAGTTTAACCCTGTGGATG ATAATCACTTCATGAGTGGTTCAATTGATGGAAAAGTCCGCATATGGGCAGTTAATAGTTGCCAAGTTGTTGATTGGACTGATATAAAAGATATCGTTAC GGCAGTGTGTTATCGTCCAGATGGGCAGGGAGGGATCGTTGGCTCTCTGACAGGAAACTGTCGCTTTTATAACATGTCAGTTTCACCAGGTTCAGACAGT TACTTGCAACTTGATGCTCAGATCTGCTTACCTGGTAAAAAGAAGTCACCTTGCAAAAGAATAACTGGCTTCCAGTTTTCCCCACAAGACTCAACCAAAG TAATGGTGAGTTGTGCTGATTCACAAGTCAGAATTCTTCAAGGACTTGATGTGATAGGCAAATATAAAAGCAATACAGCAAACCAGATATCTGCATCTTT TACTTTGGATGGAAAGCATATTATCTCGGCTTGTGAGGATTCCAATGTACATTTGTGGAATTACATTGATCAGGAACAACATGCTACTCCTCAATCAAAA AACTCCAGGTCTTATGAGCATTTCTCTGCCAATGCATCTGTTGCTATACCTTGGTGTGGATTGAAATGTGGGAGCTTAGATAATGGATGGGGTTTTCGTG TCTCTGACAATAATTCACAGGAAGTTCTACCTCTTTCTTCTCCGGCTCATTTTTCTCTGAGTCAAGAATATTTCTCAGAATCCTTTCCCAAGGGTTGCGC TACTTGGCCAGAGGAAAAGCTTTCTTCGAGCCCATTATCTACATCATCAGCAATGCACAAATCCCAATACAAGTTTCTGAAAACTTCATGCCAGAGCACA GACAGTTCTCACGCTTGGGGTCTAGTCATTGTGACTGCAGGGTGGGATGGAAGAATAAAATCATTCCACAATTATGGGTTACCAGTTTCTGATTAA
AA sequence Show only first row Show all	>Potri.012G018200.14 pacid=42783896 polypeptide=Potri.012G018200.14.p locus=Potri.012G018200 ID=Potri.012G018200.14.v4.1 annot-version=v4.1 MGSLSEEEHRFFDAYEDIASISDAKSDSFEIFDSHSSFDNSVSISLHHELWIKSLGSVQEQRSKFFDWMGIGLNENGNRNLEAFNPEGESDRITESSGAV LRKSCFEDEFCSTRSMMSCWSNGESSLSAELGLMGNFVCREGDSGGGMVCKVDELGQDVKANEGCEVDSEQSVAAEESENISESSPSFQKPMQNEVGEPN TLVDTPRRLKKGWLSRIRSISCIVYSLREADKLRHDDDDDDDALLRYRVQRVKVHRYGKRIKELSALYKGQDIQAHEGSILTMKFSPDGQYLASAGEDGV VRVWQVLESERSNELDIPEIDPSCIYFTVNQLSELKPLLVEKERTAKMRSMRKTSDSACVIFPPKVFRILEKPLHEFHGHREEILDLSWSKNNHLLSASV DKTVCLWQVGRDSCLRVFLHSNYVTCVQFNPVDDNHFMSGSIDGKVRIWAVNSCQVVDWTDIKDIVTAVCYRPDGQGGIVGSLTGNCRFYNMSVSPGSDS YLQLDAQICLPGKKKSPCKRITGFQFSPQDSTKVMVSCADSQVRILQGLDVIGKYKSNTANQISASFTLDGKHIISACEDSNVHLWNYIDQEQHATPQSK NSRSYEHFSANASVAIPWCGLKCGSLDNGWGFRVSDNNSQEVLPLSSPAHFSLSQEYFSESFPKGCATWPEEKLSSSPLSTSSAMHKSQYKFLKTSCQST DSSHAWGLVIVTAGWDGRIKSFHNYGLPVSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24320			Transducin/WD40 repeat-like su...		Potri.012G018200 [exp]	0	1
AT4G22560			unknown protein		Potri.001G121600 [exp]	9.64	0.8109
AT5G48460			Actin binding Calponin homolog...		Potri.002G251600 [exp]	18.46	0.7837
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Potri.002G034600 [exp]	18.73	0.7844
AT1G19835			Plant protein of unknown funct...		Potri.002G024400 [exp]	18.97	0.7986
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	22.44	0.8004	Pt-CIP7.1
AT2G04850			Auxin-responsive family protei...		Potri.002G222600 [exp]	22.93	0.8064
AT3G01810			unknown protein		Potri.001G333200 [exp]	28.82	0.8037
AT3G23200			Uncharacterised protein family...		Potri.008G165500 [exp]	33.16	0.7841
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	36.87	0.7701
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.005G116800 [exp]	38.26	0.7621

Compare expression of checked genes

Potri.012G018200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.