Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG933
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24330 480 / 3e-171 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G09790 410 / 3e-143 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT3G01460 64 / 6e-11 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 56 / 2e-08 RING/FYVE/PHD-type zinc finger family protein (.1) AT5G44800 54 / 1e-07 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G19510 51 / 8e-07 HD HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT3G05670 50 / 1e-06 RING/U-box protein (.1) AT3G53680 50 / 2e-06 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT4G14700 49 / 4e-06 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT3G14980 49 / 4e-06 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009632 [exp] 622 / 0 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.007G109900 [exp] 421 / 1e-147 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.005G058000 [exp] 418 / 2e-146 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.003G126600 [exp] 63 / 2e-10 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.017G072460 [exp] 62 / 4e-10 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.005G021000 [exp] 56 / 2e-08 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.006G277400 [exp] 54 / 5e-08 AT2G19260 169 / 4e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G298400 [exp] 55 / 6e-08 AT3G19510 292 / 1e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.018G142300 [exp] 54 / 7e-08 AT2G19260 205 / 5e-57 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007782 [exp] 403 / 2e-142 AT5G24330 386 / 1e-135 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10016526 [exp] 389 / 1e-136 AT5G24330 388 / 4e-136 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10040794 [exp] 230 / 6e-76 AT5G24330 221 / 5e-73 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10040793 [exp] 71 / 1e-15 AT5G24330 67 / 3e-15 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10030625 [exp] 62 / 4e-10 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 62 / 5e-10 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 61 / 1e-09 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10008495 [exp] 59 / 3e-09 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10000973 [exp] 54 / 9e-08 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028655 [exp] 53 / 2e-07 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.012G018300.1 pacid=42782823 polypeptide=Potri.012G018300.1.p locus=Potri.012G018300 ID=Potri.012G018300.1.v4.1 annot-version=v4.1 ATGGCGCTGAGAAGCAAGAGAAGTCAAGCTCCAAAGCCAATATCTAGATCCAAAGCTGCTGCTGCTGATTACAGTGATGTTTACTGTGAAAAATGTGGGT CAGGAGAGTCACCAGGAGAGCTACTTCTTTGTGATAAATGTGATAAAGGGTTTCATTTGTTTTGCTTGAGACCTATCCTTGTTGCTGTTCCAAAAGGGTC TTGGTTTTGTCCTTCCTGTTCCAAGCAAAAGATGCCCAATTCATTTCCTCTTGTTCAAACAAAAATCATCGATTTCTTTCGCATTCAACGGTCCACAGAA TCGATTCAGAAGCTAAGTCAAGATATTCAGAAGAAGCGAAAGCGGTCTAGTAGTTTAGTGGTGTCGAAGAAGAGGAGGAAGCTGTTGCCATTTAGTCCGA GTGAAGATCCTGAAAAGAGACTAGAGCAAATGAGATCACTAGCAACAGCATTGACAGCCTCGGGGACGGAGTTCAGCAATGAACTAACTTACCGGCCAGG CATGGCACCGAGGTCTGTGAATCAGCCAGCTCTTGAGAAGGGAGGAATGCAGGTCTTGTCAAAAGAAGATGCTGAAACCTTAAATTTGTGCAAAAGGATG ATGAATAGAGGTGAATGGCCTCCTCTCATGGTTGTTTTTGATCCTAAGGAAGGGTTCACAGTAGAGGCAGATAGATTCATAAAAGATTTAACGATTATAA CTGAGTATGTTGGAGATGTTGATTACTTGAAGAACCGGGAAAATGATGATGGTGATAGCATGATGACATTGCTTCATGCTGATAATCCTTCACAAAGCCT TGTCATATGTCCTGACATGCGTGGGAATATAGCTCGATTTATCAATGGTATCAACAATCATACACAAGAAGGGAGAAAGAAGCAGAATCTAAAATGTGTG AGGTATGATGTAAATGGTGAATGCCGGGTTTTGCTGATAGCCAACAGGGATATATCAAAGGGGGAGAGATTATATTATGACTACAACGGATATGAACATG AATACCCAACAGAGCATTTTGTTTAA
AA sequence Show only first row Show all	>Potri.012G018300.1 pacid=42782823 polypeptide=Potri.012G018300.1.p locus=Potri.012G018300 ID=Potri.012G018300.1.v4.1 annot-version=v4.1 MALRSKRSQAPKPISRSKAAAADYSDVYCEKCGSGESPGELLLCDKCDKGFHLFCLRPILVAVPKGSWFCPSCSKQKMPNSFPLVQTKIIDFFRIQRSTE SIQKLSQDIQKKRKRSSSLVVSKKRRKLLPFSPSEDPEKRLEQMRSLATALTASGTEFSNELTYRPGMAPRSVNQPALEKGGMQVLSKEDAETLNLCKRM MNRGEWPPLMVVFDPKEGFTVEADRFIKDLTIITEYVGDVDYLKNRENDDGDSMMTLLHADNPSQSLVICPDMRGNIARFINGINNHTQEGRKKQNLKCV RYDVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Potri.012G018300 [exp]	0	1	SDG933
					Potri.004G053600 [exp]	3.00	0.8889
AT5G54970			unknown protein		Potri.006G052300 [exp]	7.74	0.8611
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Potri.001G225600 [exp]	8.48	0.8943	SYN3.1
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Potri.011G083700 [exp]	9.94	0.8779
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Potri.015G009632 [exp]	13.41	0.8737
AT1G07270			Cell division control, Cdc6 (....		Potri.001G250200 [exp]	14.73	0.8796
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	15.49	0.8874
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Potri.009G054300 [exp]	16.15	0.8503	Pt-ORC1.1
AT2G20980		MCM10	minichromosome maintenance 10 ...		Potri.009G134500 [exp]	16.27	0.8832
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Potri.008G126300 [exp]	17.43	0.8780

Compare expression of checked genes

Potri.012G018300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.